BS31622.complete Sequence
1496 bp assembled on 2012-10-15
GenBank Submission: KX803771
> BS31622.complete
GAAGTTATCAGTCGACATGTATACGCAACGTATGTTTGACATGTGGAGCA
GCGTCACTTCGAAACTGGAAGCACACGCAAACAATCTCGGTCAAAGCAAC
GTCCAATCGCCGGCGGGACAAAACAACTCCAGCGGTTCCATTAAAGCTCA
AATTGAGATAATTCCATGCAAAGTCTGCGGCGACAAGTCATCCGGCGTGC
ATTACGGAGTGATCACCTGCGAGGGCTGCAAGGGATTCTTTCGAAGATCG
CAGAGCTCCGTGGTCAACTACCAGTGTCCGCGCAACAAGCAATGTGTGGT
GGACCGTGTTAATCGCAACCGATGTCAATATTGTAGACTGCAAAAGTGCC
TAAAACTGGGAATGAGCCGTGATGCTGTAAAGTTCGGCAGGATGTCCAAG
AAGCAGCGCGAGAAGGTCGAGGACGAGGTACGCTTCCATCGGGCCCAGAT
GCGGGCACAAAGCGACGCGGCACCGGATAGCTCCGTATACGACACACAGA
CGCCCTCGAGCAGCGACCAGCTGCATCACAACAATTACAACAGCTACAGC
GGCGGCTACTCCAACAACGAGGTGGGCTACGGCAGTCCCTACGGATACTC
GGCCTCCGTGACGCCACAGCAGACCATGCAGTACGACATCTCGGCGGACT
ACGTGGACAGCACCACCTACGAGCCGCGCAGTACAATAATCGATCCCGAA
TTTATTAGTCACGCGGATGGCGATATCAACGATGTGCTGATCAAGACGCT
GGCGGAGGCGCATGCCAACACAAATACCAAACTGGAAGCTGTGCACGACA
TGTTCCGAAAGCAGCCGGATGTGTCGCGCATTCTCTACTACAAGAATCTG
GGCCAAGAGGAACTCTGGCTGGACTGCGCCGAGAAGCTTACACAAATGAT
ACAGAACATAATCGAATTTGCTAAGCTCATACCGGGATTCATGCGCCTAA
GTCAGGACGATCAGATATTACTGCTGAAGACGGGCTCCTTTGAGCTGGCG
ATTGTTCGCATGTCCAGACTGCTTGATCTCTCACAGAACGCGGTTCTCTA
CGGCGACGTGATGCTGCCCCAGGAGGCGTTCTACACATCCGACTCGGAAG
AGATGCGTCTGGTGTCGCGCATCTTCCAAACGGCCAAGTCGATAGCCGAA
CTCAAACTGACTGAAACCGAACTGGCGCTGTATCAGAGCTTAGTGCTGCT
CTGGCCAGAACGCAATGGAGTGCGTGGTAATACGGAAATACAGAGGCTTT
TCAATCTGAGCATGAATGCGATCCGGCAGGAGCTGGAAACGAATCATGCG
CCGCTCAAGGGCGATGTCACCGTGCTGGACACACTGCTGAACAATATACC
CAATTTCCGCGATATTTCCATCTTGCACATGGAATCGCTGAGCAAGTTCA
AGCTGCAGCACCCGAATGTCGTTTTTCCGGCGCTGTACAAGGAGCTGTTC
TCGATAGATTCGCAGCAGGACCTGACATAAAAGCTTTCTAGACCAT
BS31622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-RF | 1464 | CG33183-PF | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| Hr46-RH | 1590 | CG33183-PH | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| Hr46-RA | 1464 | CG33183-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-RF | 7524 | CG33183-RF | 2048..3511 | 17..1480 | 7320 | 100 | Plus |
| Hr46-RH | 6071 | CG33183-RH | 2054..3517 | 17..1480 | 7320 | 100 | Plus |
| Hr46-RA | 6071 | CG33183-RA | 2054..3517 | 17..1480 | 7320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10208401..10208646 | 1208..963 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 10209880..10210113 | 374..141 | 1155 | 99.6 | Minus |
| 2R | 25286936 | 2R | 10209101..10209273 | 713..541 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 10209440..10209609 | 543..374 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 10208191..10208343 | 1359..1207 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 10208706..10208853 | 964..817 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 10222477..10222606 | 146..17 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10208008..10208129 | 1480..1359 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 10208920..10209025 | 818..713 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:50:23 has no hits.
BS31622.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:11:13 Download gff for
BS31622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RA | 227..1688 | 17..1478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:36 Download gff for
BS31622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RA | 2054..3515 | 17..1478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:00 Download gff for
BS31622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr46-RA | 2054..3515 | 17..1478 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:00 Download gff for
BS31622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10208401..10208644 | 965..1208 | 100 | <- | Minus |
| 2R | 10208706..10208852 | 818..964 | 100 | <- | Minus |
| 2R | 10208921..10209024 | 714..817 | 100 | <- | Minus |
| 2R | 10209101..10209270 | 544..713 | 100 | <- | Minus |
| 2R | 10209440..10209608 | 375..543 | 100 | <- | Minus |
| 2R | 10222477..10222606 | 17..146 | 100 | | Minus |
| 2R | 10209880..10210107 | 147..374 | 100 | <- | Minus |
| 2R | 10208191..10208341 | 1209..1359 | 100 | <- | Minus |
| 2R | 10208010..10208128 | 1360..1478 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:36 Download gff for
BS31622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6097385..6097612 | 147..374 | 100 | <- | Minus |
| arm_2R | 6109982..6110111 | 17..146 | 100 | | Minus |
| arm_2R | 6095696..6095846 | 1209..1359 | 100 | <- | Minus |
| arm_2R | 6095515..6095633 | 1360..1478 | 100 | <- | Minus |
| arm_2R | 6095906..6096149 | 965..1208 | 100 | <- | Minus |
| arm_2R | 6096211..6096357 | 818..964 | 100 | <- | Minus |
| arm_2R | 6096426..6096529 | 714..817 | 100 | <- | Minus |
| arm_2R | 6096606..6096775 | 544..713 | 100 | <- | Minus |
| arm_2R | 6096945..6097113 | 375..543 | 100 | <- | Minus |
BS31622.pep Sequence
Translation from 16 to 1479
> BS31622.pep
MYTQRMFDMWSSVTSKLEAHANNLGQSNVQSPAGQNNSSGSIKAQIEIIP
CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNR
NRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFHRAQMRAQSD
AAPDSSVYDTQTPSSSDQLHHNNYNSYSGGYSNNEVGYGSPYGYSASVTP
QQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHA
NTNTKLEAVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQMIQNIIE
FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVML
PQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLWPERN
GVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDI
SILHMESLSKFKLQHPNVVFPALYKELFSIDSQQDLT*
BS31622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr46-PF | 487 | CG33183-PF | 1..487 | 1..487 | 2522 | 100 | Plus |
| Hr46-PH | 529 | CG33183-PH | 1..487 | 1..487 | 2522 | 100 | Plus |
| Hr46-PA | 487 | CG33183-PA | 1..487 | 1..487 | 2522 | 100 | Plus |
| Hr46-PE | 874 | CG33183-PE | 408..874 | 19..487 | 2295 | 95.1 | Plus |
| Hr46-PC | 694 | CG33183-PC | 228..694 | 19..487 | 2295 | 95.1 | Plus |
