BS31647.complete Sequence
1901 bp assembled on 2013-04-18
GenBank Submission: KX804955
> BS31647.complete
GAAGTTATCAGTCGACATGGCAAGCAGTGTTAGCAATTTGGCCAGCACAG
TGGCCACTGCCACGACTGCTACCTTGGAGGACCTCCACTTCAGCCTCACG
GACTACATAGTCTTCTCCCTGATGCTGAGCGCCTCGGCAGGAATTGGAGT
TTACTTCGGCTTCTTCTCGAAGGCCAAGAACACCACTGAAGAGTACCTGC
AGGGTGGAAAAAGGATGCCAACCCTTCCTGTAGCCATTTCCCTTGTCTCG
AGCCAGCTGTCTGGAGTGGCCATGATGTCCGTTCCGGCGGAGACTTACTC
CTTTGGATTCAATATGATCTTCGTGGTGTGGGCCATGGTCTTGTCTGTGC
CCGTTCTTATATATATCATTGTGCCCGTTTTCTACGATAATAATGTCTCC
AATTGCTACGAGTATCTTGAGTTGCGATTTAGCAAGCGCACACGACAATT
GGTGACCATCACCTTTATCCTCAACCAATTTCTGATGCTTCCCGTGTACA
TGTTTGTGCCCTCGCTGGCCTTTTCTCAAGTTACTGGATACAACATTCAT
CTGATTAACACGGTGGTCTCGTCCATCTGCGTTTTCTACACGATGCTTGG
CGGGATCAAGGCGGTTGTCTGGACAGATGTGGTCCAGGGAAGCGTTATGT
TGATCTCAGTTGTTCTAGTGGCCATTTTGGGTACCTCGAACACAGGAGGC
ATAACCAATGTCTTGGAAAACGCCGCTGAGGGGGGCCGTTTTGACTTTAG
TTTTGGCATCGATCCCCGCCTGCGCCTCACCTTCATCAGTGGAATGGCCA
GCGGCCTTCTGATGTGGACAGGTAAGCTTGGCCTTGACCAGAGCTGCGTC
CAGAGGATTGTGTCTTTGCCCTCGTATGGCCACGCCAAGAGGTGTCTGCT
TATGGCTGGCGTTGGCTTCCTACTCATCATGTCCTTTACCTGCTTCACCG
GAATCATCATGTTTGCCTACTACTACGGATGCGATCCCATTCAGGCTGGA
CTGGTCAGCAAGCCAGACAAGTTGATGCCGTTCTTCATCCAGGATATAAT
GGGTCACATGATGGGCATGCCCGGCGTCTTCATCTCCTGCGTTTTCAGTG
CCTCGCTGAGTTCCCTTTCTGCCAGTCTGAATTCCTTTGCCGGAGTGGTT
TACTTCGACTACATCAAGCCGCGAATCAATCACTCCGAAGCCAAAGCTAA
TGCAACTATGAAACTGGTGATTGTGGTCATGGGAGCGTACTGCATAGTGG
GCGGCTTCATCGTGCAGAACTTTAACTCCATTATTCAGACCATGTGGACG
ATTACCGGCATTAATATGGGCGCTGTCGTGGGAGTGTTTTGTCTGGGCAT
GTTTGTGCCGCGTTGCAATGCCAAGGTGGCGGTGAGTGGAATTGCCTTCA
GCTGCCTGGTGATGCTGTGGATCATCATCAATGGCCAGATGAACTTTAAG
GCTGGGCTGATTAAGTACGATCCCTTGCCTAATGGGCTGGACCAGTGCGA
GGCCAAGGGCTTCGAGGTCATCTTGAATGCGATAAGAAACAAGAATGTTA
CCAACGTTGGCACAACTGCGATTCCCTCGCTGGAAGCTCCCAAGGAACTT
ACCACCGCATTCGATAGCAATCGCGACTTTTCCATCTACGACACATCTTT
TTACTGGTACAAGGTCCTAGGTGCTCTTCTAGTCTTCGCGTGGGCCATTC
CCATGAGCTATGTGTGGCCCTTGGACAAGGAAGAAAAGCAGAACCCCAAG
CTCTACTCGCCATTCGTGCGTAGCATGTTGAACAAGCCAAGTCCAGTTTT
GGAGCTCGAGGAATTGCCTCTGAAGACGCCGCTTTCCGAAGAGCAAATCA
AGGAGAAGGAAAACGGCAGCGCAACAGAAGCTTAGAAGCTTTCTAGACCA
T
BS31647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
salt-RB | 1869 | CG2196-PB | 1..1869 | 17..1885 | 9345 | 100 | Plus |
salt-RC | 1866 | CG2196-PC | 1..1866 | 17..1885 | 9265 | 99.8 | Plus |
CG2187-RB | 1872 | CG2187-PB | 931..1486 | 950..1505 | 800 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
salt-RB | 2114 | CG2196-RB | 88..1956 | 17..1885 | 9345 | 100 | Plus |
salt-RC | 2111 | CG2196-RC | 88..1953 | 17..1885 | 9265 | 99.8 | Plus |
CG2187-RB | 2021 | CG2187-RB | 1002..1557 | 950..1505 | 800 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31752398..31752930 | 1533..1001 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 31751983..31752334 | 1885..1534 | 1760 | 100 | Minus |
3R | 32079331 | 3R | 31752990..31753245 | 1000..745 | 1280 | 100 | Minus |
3R | 32079331 | 3R | 31754383..31754618 | 252..17 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 31753304..31753525 | 750..529 | 1110 | 100 | Minus |
3R | 32079331 | 3R | 31753850..31754011 | 412..251 | 810 | 100 | Minus |
3R | 32079331 | 3R | 31753592..31753711 | 530..411 | 600 | 100 | Minus |
3R | 32079331 | 3R | 31757802..31757932 | 225..95 | 220 | 77.9 | Minus |
3R | 32079331 | 3R | 31760197..31760387 | 1170..980 | 220 | 74.3 | Minus |
3R | 32079331 | 3R | 31756946..31757021 | 639..564 | 215 | 85.5 | Minus |
3R | 32079331 | 3R | 31761200..31761394 | 291..97 | 195 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:17:10 has no hits.
BS31647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:02:00 Download gff for
BS31647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
salt-RB | 74..1942 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:28 Download gff for
BS31647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
salt-RB | 88..1956 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:16 Download gff for
BS31647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
salt-RB | 88..1956 | 17..1885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:16 Download gff for
BS31647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31751983..31752334 | 1534..1885 | 100 | <- | Minus |
3R | 31752398..31752930 | 1001..1533 | 100 | <- | Minus |
3R | 31752990..31753239 | 751..1000 | 100 | <- | Minus |
3R | 31753304..31753523 | 531..750 | 100 | <- | Minus |
3R | 31753592..31753709 | 413..530 | 100 | <- | Minus |
3R | 31753850..31754009 | 253..412 | 100 | <- | Minus |
3R | 31754383..31754618 | 17..252 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:28 Download gff for
BS31647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27577705..27578056 | 1534..1885 | 100 | <- | Minus |
arm_3R | 27578120..27578652 | 1001..1533 | 100 | <- | Minus |
arm_3R | 27578712..27578961 | 751..1000 | 100 | <- | Minus |
arm_3R | 27579026..27579245 | 531..750 | 100 | <- | Minus |
arm_3R | 27579314..27579431 | 413..530 | 100 | <- | Minus |
arm_3R | 27579572..27579731 | 253..412 | 100 | <- | Minus |
arm_3R | 27580105..27580340 | 17..252 | 100 | | Minus |
BS31647.pep Sequence
Translation from 16 to 1884
> BS31647.pep
MASSVSNLASTVATATTATLEDLHFSLTDYIVFSLMLSASAGIGVYFGFF
SKAKNTTEEYLQGGKRMPTLPVAISLVSSQLSGVAMMSVPAETYSFGFNM
IFVVWAMVLSVPVLIYIIVPVFYDNNVSNCYEYLELRFSKRTRQLVTITF
ILNQFLMLPVYMFVPSLAFSQVTGYNIHLINTVVSSICVFYTMLGGIKAV
VWTDVVQGSVMLISVVLVAILGTSNTGGITNVLENAAEGGRFDFSFGIDP
RLRLTFISGMASGLLMWTGKLGLDQSCVQRIVSLPSYGHAKRCLLMAGVG
FLLIMSFTCFTGIIMFAYYYGCDPIQAGLVSKPDKLMPFFIQDIMGHMMG
MPGVFISCVFSASLSSLSASLNSFAGVVYFDYIKPRINHSEAKANATMKL
VIVVMGAYCIVGGFIVQNFNSIIQTMWTITGINMGAVVGVFCLGMFVPRC
NAKVAVSGIAFSCLVMLWIIINGQMNFKAGLIKYDPLPNGLDQCEAKGFE
VILNAIRNKNVTNVGTTAIPSLEAPKELTTAFDSNRDFSIYDTSFYWYKV
LGALLVFAWAIPMSYVWPLDKEEKQNPKLYSPFVRSMLNKPSPVLELEEL
PLKTPLSEEQIKEKENGSATEA*
BS31647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
salt-PB | 622 | CG2196-PB | 1..622 | 1..622 | 3190 | 100 | Plus |
salt-PC | 621 | CG2196-PC | 1..621 | 1..622 | 3173 | 99.8 | Plus |
CG2187-PB | 623 | CG2187-PB | 2..622 | 3..621 | 2222 | 67.5 | Plus |
CG2187-PA | 623 | CG2187-PA | 2..622 | 3..621 | 2222 | 67.5 | Plus |
Smvt-PA | 591 | CG2191-PA | 1..588 | 5..605 | 1568 | 50.7 | Plus |