BS31717.complete Sequence
2510 bp assembled on 2012-10-15
GenBank Submission: KX801941
> BS31717.complete
GAAGTTATCAGTCGACATGGCATTCGAGAGCTCTGCACAGCAGTTAAAGA
TTCCGGACGAAAGGATGAATGCACAGTTGAACAATAGTGGCGTACAGGCG
TCGCAATCCCATGTCCTATTCACACCCAATCAGATACCGGGCGCGCTGAT
AAGGATTTCAGACGATTTCCTTACCTCCACGCCGGGAGAGGGCCAGAAGG
ACGTGCCCACCACGGAGAGCACAAAATTGCAGAACCTGCACAGCCGCAAG
CTGTGGGACATAGGTCCTGGTTCCATTCATGGCGAGGGGAAGACACCGAA
GTTGGCCGTGAAGCGTCTCTGGCCAGGCTGCGGGGACGACGAGCCGAACG
CCAAAAAAGCACTGGCATTCGAGCAATTTGTGTCGATATACGATAGGAAA
ATAACGCCGCTACCTCAAATCGAAAAAAGTCAAAGCCGCAAACAAAATAA
CGAATTCGATTTCGCATTCGAAATGTCCGCGAAGCCAAGTGCCAATTCGG
AGGACATCCTTCTGGCCGGCCTGCTCCAGGACTGGAAACTAGAGGACCAT
GACAACGCACAGATTGGCTGCGACCCAGCGCCCATGCCGGCCAGTCAATC
CGAATTGGCACTGGTTCATTTGAAGTTGCCGTGCAAGACGCCCCAATCCC
AGCCCCAGGTGGAAGCCCATCAAAATGCTTCAGTTGCGACCGTCAACAGC
GACAGCGGAAGCATAATACTAGTGTCCGATGATTCCTCAGCTACGGCGTG
CAGCTTCCTTCACTCGTCCGAGCTCTGTAACTCCTCCGACTTCGAAGAAC
TGCGCAAGGAGTTCACCGAGGACTCCTCATACATCGATCTCTCACTTGAT
TCGGGCAGCAGCAATCCTAGTGCCATTGAAACCGACATGAAGACACACAA
ACTGGGCGCGAAGCGCAGATCGCCGCAGACCAAGGGCGATGTGTTGGCCA
AAAAGATTTCTTACCAGAATCTGAACGAGATGAACATCTCCTCGAATCAA
CCCGTGGTGACGCGCAGTGGTCGTGTTGTGGTCTCACGTCCGAACCAGCA
GTTTGACTACTCCTCCTCCTCCCAGTCGAAGGGCGATGGCGAGGAGGACT
CCGACGAGGTGTCACTGGATGCCGACGACGATGAGTATGAGGGAGAAGAT
TTCGATCAGCTCAAGTGGACGGAGCGCAAACGGCGTAGCTTTAGAAACAC
CAGCTTAGCCTTCAGCCCCGATGGCAGCCGCTCGTCGCCGGAGGCAACAC
CTCCGATGGTCTATGTCGAATTGGGCGGCAAAATCGTGATCATTAGGGAT
AAACCACAGCCCAATATCGTTCTGGAAGACGATAAGGAACTCAAGACGCA
GATGCACAAGTTTTTGGGTCTGATTCCATCACGTCGCAAGCTCTTCGATC
CGTCGGAATACAATATGGATCGGGGGGATATTGAGATGGATGTGTACGTA
CCGACCAGTCTTGTTACCAATCCATCACCTAGGTCCTCACCAAGCCCAGT
TACTCCATCGGCCAGGTCACGAATATGGCAGGAAACAACGCCGACATCCA
TTTGCTCCAACTTGAATTTATCGCATACCTACACACCGACCGTGAATGAG
CTCCAGACTAAGCACATGGATGACTCTATAATCCAGGTGAATTTGGACTG
CTTTCAGAAGAAAACACCAGACTCTGTCAAGGAGCCCATTGATCTAAGCG
AGCTTCCCAGCCAAAAGCAACTAGCCACCAACTGCCGCCGCCACAAGAGC
TGTGTAGCCCGCCTGGAGCGGCACCCACATTTCTACGGTTTCGTCCAGTC
GCTCAGACCGTCAGTCTCGCTCAACATGTGCCATCCGCTGGCCCTCACCT
TCCGGCGGACCAATTTCCAGCAATCTAAGGTGGCACTGGCCAAGGTTCTG
TTCAACATGTTCAATCACGCGGTCTTCCACTGTGGCCTGCAGGTGCCCAT
TGTTTGGAAGCACGCAATGAAGAAGCGCTGGAAATGCGAGCTTGGCTTCG
ACGCCTCCGGCAGGCGCACAGCACAGATCCTGCTTCTGCACAGCATAGAC
ACTGCGGCCGAGCTTATCTATCTCCTGCTGCACGAGATGTGCCATGTGGC
GGCTTTCCTGTTCAACCGGGAGTTGGGTCACGGCGACAACTGCCGCAGAT
GGACCTACCAGGCGAAGATGGCCTTTCCGGAGGTGCCCGCCCTCATGGAG
TGCATAGCTAGCTTCATGTATACGTGCAGCATGTGCAGCCGTTCCTCCTA
CGGCTTGGCCGACTTGAAATCGTACAACATACGCTGCTACTACTGCCAGT
TCGAGGTGAGCGTGAAGCCCGTTAGCAAGGCGAACATGCACGAGGGCGCC
CGTTCCGATCGGACGATGACACCGTTCAAGTGTTTCATCCGTGACAAGTA
TTTGAAGCTGGGCGCGGAGGGGGGCGTCACACACTCCTCGAAGATGGCGC
TACTCAACGAAATGTTCGCGAAGATGACAGCCGCCACGGAATAGAAGCTT
TCTAGACCAT
BS31717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2694-RA | 2478 | CG2694-PA | 1..2478 | 17..2494 | 12390 | 100 | Plus |
| CG2694-RD | 2469 | CG2694-PD | 1..2469 | 17..2494 | 11990 | 99.1 | Plus |
| CG2694-RB | 2022 | CG2694-PB | 1..2022 | 473..2494 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2694-RA | 3075 | CG2694-RA | 52..2529 | 17..2494 | 12390 | 100 | Plus |
| CG2694-RB | 3152 | CG2694-RB | 208..2606 | 96..2494 | 11995 | 100 | Plus |
| CG2694-RD | 3066 | CG2694-RD | 52..2520 | 17..2494 | 11990 | 99.1 | Plus |
| CG2694-RB | 3152 | CG2694-RB | 52..133 | 17..98 | 410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2715514..2716706 | 960..2152 | 5965 | 100 | Plus |
| X | 23542271 | X | 2714775..2715280 | 358..863 | 2530 | 100 | Plus |
| X | 23542271 | X | 2716765..2717108 | 2151..2494 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 6758086..6758870 | 2460..1679 | 1475 | 79.5 | Minus |
| X | 23542271 | X | 2714286..2714455 | 96..265 | 850 | 100 | Plus |
| X | 23542271 | X | 2714509..2714606 | 262..359 | 490 | 100 | Plus |
| X | 23542271 | X | 2715338..2715433 | 864..959 | 480 | 100 | Plus |
| X | 23542271 | X | 2714130..2714211 | 17..98 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 6759133..6759281 | 1401..1253 | 325 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:50:33 has no hits.
BS31717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:11:14 Download gff for
BS31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2694-RA | 50..2527 | 17..2494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:38 Download gff for
BS31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2694-RA | 52..2529 | 17..2494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:03 Download gff for
BS31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2694-RA | 52..2529 | 17..2494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:03 Download gff for
BS31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2715338..2715433 | 864..959 | 100 | -> | Plus |
| X | 2714130..2714210 | 17..97 | 100 | -> | Plus |
| X | 2714288..2714453 | 98..263 | 100 | -> | Plus |
| X | 2714511..2714606 | 264..359 | 100 | -> | Plus |
| X | 2714777..2715280 | 360..863 | 100 | -> | Plus |
| X | 2715514..2716705 | 960..2151 | 100 | -> | Plus |
| X | 2716766..2717108 | 2152..2494 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:38 Download gff for
BS31717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2608163..2608243 | 17..97 | 100 | -> | Plus |
| arm_X | 2608321..2608486 | 98..263 | 100 | -> | Plus |
| arm_X | 2608544..2608639 | 264..359 | 100 | -> | Plus |
| arm_X | 2608810..2609313 | 360..863 | 100 | -> | Plus |
| arm_X | 2609371..2609466 | 864..959 | 100 | -> | Plus |
| arm_X | 2609547..2610738 | 960..2151 | 100 | -> | Plus |
| arm_X | 2610799..2611141 | 2152..2494 | 100 | | Plus |
BS31717.pep Sequence
Translation from 16 to 2493
> BS31717.pep
MAFESSAQQLKIPDERMNAQLNNSGVQASQSHVLFTPNQIPGALIRISDD
FLTSTPGEGQKDVPTTESTKLQNLHSRKLWDIGPGSIHGEGKTPKLAVKR
LWPGCGDDEPNAKKALAFEQFVSIYDRKITPLPQIEKSQSRKQNNEFDFA
FEMSAKPSANSEDILLAGLLQDWKLEDHDNAQIGCDPAPMPASQSELALV
HLKLPCKTPQSQPQVEAHQNASVATVNSDSGSIILVSDDSSATACSFLHS
SELCNSSDFEELRKEFTEDSSYIDLSLDSGSSNPSAIETDMKTHKLGAKR
RSPQTKGDVLAKKISYQNLNEMNISSNQPVVTRSGRVVVSRPNQQFDYSS
SSQSKGDGEEDSDEVSLDADDDEYEGEDFDQLKWTERKRRSFRNTSLAFS
PDGSRSSPEATPPMVYVELGGKIVIIRDKPQPNIVLEDDKELKTQMHKFL
GLIPSRRKLFDPSEYNMDRGDIEMDVYVPTSLVTNPSPRSSPSPVTPSAR
SRIWQETTPTSICSNLNLSHTYTPTVNELQTKHMDDSIIQVNLDCFQKKT
PDSVKEPIDLSELPSQKQLATNCRRHKSCVARLERHPHFYGFVQSLRPSV
SLNMCHPLALTFRRTNFQQSKVALAKVLFNMFNHAVFHCGLQVPIVWKHA
MKKRWKCELGFDASGRRTAQILLLHSIDTAAELIYLLLHEMCHVAAFLFN
RELGHGDNCRRWTYQAKMAFPEVPALMECIASFMYTCSMCSRSSYGLADL
KSYNIRCYYCQFEVSVKPVSKANMHEGARSDRTMTPFKCFIRDKYLKLGA
EGGVTHSSKMALLNEMFAKMTAATE*
BS31717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2694-PA | 825 | CG2694-PA | 1..825 | 1..825 | 4324 | 100 | Plus |
| CG2694-PD | 822 | CG2694-PD | 1..822 | 1..825 | 4252 | 98.8 | Plus |
| CG2694-PB | 673 | CG2694-PB | 1..673 | 153..825 | 3529 | 100 | Plus |
| CG11322-PB | 480 | CG11322-PB | 1..480 | 291..825 | 1415 | 56.1 | Plus |
| CG14814-PD | 1030 | CG14814-PD | 769..1003 | 591..819 | 224 | 28.1 | Plus |
