BS31733.complete Sequence
3158 bp assembled on 2013-01-14
GenBank Submission: KX806551
> BS31733.complete
GAAGTTATCAGTCGACATGGCGTTAAGGTCGGATTACGAGCATGGGAGGG
CGGACTCTTATCGAGTCGCCACGGTTATAGCCACCGATGACGACAATCGC
ACAGCCGATGGCCAGTACAAGTCAAGACGCAAGATGCCGGCCAAAGTTAA
TAAAAAGGAGAATTTAGATGATCTCAAACAGGAGTTGGATATCGATTTTC
ATAAAATCTCTCCTGAGGAATTGTATCAGCGCTTTCAGACACATCCCGAA
AATGGTCTAAGTCACGCCAAGGCCAAGGAAAACTTGGAGCGCGATGGTCC
CAATGCGCTGACGCCACCCAAGCAGACGCCCGAATGGGTGAAGTTCTGTA
AGAACCTGTTCGGTGGCTTCGCCATGTTGCTGTGGATCGGTGCTATTCTC
TGCTTTGTGGCCTATTCTATCCAGGCCAGCACCAGCGAGGAGCCGGCCGA
CGATAATTTGTATCTGGGTATTGTACTTTCCGCTGTCGTCATCGTGACGG
GCATTTTCTCATACTATCAGGAATCGAAAAGTTCTAAGATCATGGAATCG
TTCAAGAACATGGTACCCCAGTTCGCCACCGTCATCCGCGAGGGCGAGAA
ACTCACGCTGCGCGCTGAGGATCTCGTTCTGGGCGATGTCGTTGAGGTGA
AGTTCGGCGACCGTATCCCCGCTGATATCCGCATCATCGAGGCGCGCAAC
TTCAAGGTGGACAACTCCTCGCTGACCGGCGAGTCGGAGCCGCAGTCCCG
CGGTGCCGAGTTCACCCATGAGAATCCGCTGGAGACCAAGAATCTGGCCT
TCTTCTCCACCAACGCCGTCGAGGGCACTGCCAAGGGTGTGGTCATCAGC
TGTGGCGATCACACCGTCATGGGCCGCATTGCTGGCCTTGCCTCCGGTCT
AGACACCGGCGAGACGCCCATTGCCAAGGAGATCCACCATTTCATCCACC
TTATTACCGGCGTGGCCGTGTTCCTGGGCGTCACCTTCTTCGTGATTGCC
TTCATCCTGGGCTACCACTGGCTGGACGCTGTCATCTTTTTGATCGGTAT
CATCGTCGCCAACGTGCCCGAGGGTCTGCTGGCCACCGTAACTGTGTGCC
TGACCCTTACCGCCAAGCGTATGGCCTCAAAGAACTGTCTGGTGAAGAAT
CTGGAGGCCGTGGAGACCCTTGGCTCCACATCGACCATCTGCTCCGATAA
GACCGGCACCCTCACCCAGAACCGAATGACGGTCGCCCACATGTGGTTCG
ATAATCAGATCATCGAGGCCGACACAACTGAGGATCAGTCGGGTGTTCAA
TACGATAGAACCAGCCCTGGATTCAAGGCGCTCTCTCGCATTGCCACTCT
CTGTAACCGTGCCGAGTTCAAGGGAGGCCAAGATGGCGTCCCAATCCTCA
AGAAAGAAGTCAGTGGAGATGCCTCCGAGGCTGCTCTGCTCAAGTGCATG
GAACTGGCTCTGGGCGATGTGATGAACATTCGCAAGCGTAATAAGAAGAT
TGCCGAGGTGCCCTTCAACTCCACCAACAAATACCAAGTGTCCATCCACG
AAACCGAGGATACCAACGATCCCCGCTACTTGCTCGTAATGAAGGGAGCC
CCCGAACGTATCTTGGAGCGCTGCTCTACCATTTTTATCAACGGCAAGGA
GAAGGTTCTGGACGAGGAGATGAAGGAGGCGTTCAACAATGCCTACATGG
AACTCGGTGGACTGGGTGAGCGCGTGCTCGGTTTCTGTGACTTTATGCTG
CCATCCGACAAGTATCCCAACGGCTTTAAGTTCAACACCGACGACATCAA
CTTCCCCATCGATAATCTGCGTTTCGTCGGCCTTATGTCCATGATTGATC
CCCCACGTGCTGCCGTGCCCGATGCCGTTGCCAAGTGCCGATCGGCCGGC
ATCAAGGTCATCATGGTCACCGGCGATCACCCGATCACTGCCAAGGCCAT
CGCCAAGTCTGTCGGTATTATATCCGAGGGCAACGAGACCGTCGAGGACA
TTGCCCAGCGCCTCAACATACCCGTCTCTGAAGTGAATCCCCGCGAGGCC
AAGGCCGCCGTCGTCCATGGCGCTGAGCTTCGTGATGTGTCCAGCGACCA
GCTGGATGAAATCCTCCGCTACCACACCGAGATCGTCTTCGCCCGTACCT
CGCCCCAGCAGAAATTGATCATTGTCGAGGGTTGCCAGCGCATGGGAGCT
ATTGTGGCCGTGACTGGTGATGGTGTCAACGATTCTCCCGCTCTGAAGAA
AGCCGATATCGGTGTTGCCATGGGTATAGCCGGTTCCGATGTGTCCAAGC
AGGCTGCTGACATGATTTTGCTGGACGACAACTTTGCCTCCATTGTGACT
GGTGTGGAGGAGGGTCGCCTGATCTTCGACAACCTGAAAAAGTCCATCGC
CTACACCCTGACCTCCAACATTCCCGAAATCTCGCCCTTCCTGGCCTTCA
TCCTCTGCGATATACCACTGCCACTGGGAACCGTGACGATTCTTTGCATC
GATCTGGGCACTGACATGGTGCCAGCCATTTCATTGGCCTACGAGCATGC
CGAAGCCGATATTATGAAGCGTCCACCACGTGACCCCTTCAACGATAAAT
TAGTGAACTCAAGGTTGATTTCGATGGCCTACGGACAGATCGGCATGATC
CAGGCCGCCGCCGGCTTCTTTGTGTACTTCGTCATCATGGCTGAGAACGG
CTTCTTGCCCAAGAAACTGTTTGGCATTCGTAAGATGTGGGACTCAAAGG
CTGTTAACGATCTAACTGATTCCTACGGTCAAGAATGGACCTACCGCGAC
CGCAAGACCTTGGAGTATACCTGCCACACGGCCTTCTTCATCTCGATCGT
GGTTGTGCAATGGGCCGATCTGATCATCTGCAAGACGCGTCGTAACTCGA
TCTTCCAGCAGGGCATGCGCAACTGGGCTTTGAACTTTGGCCTCGTCTTT
GAAACCGTGCTGGCCGCGTTCCTCTCATACTGCCCGGGCATGGAGAAGGG
TCTGCGCATGTACCCCCTGAAACTCGTCTGGTGGTTCCCGGCTATTCCAT
TTGCGCTGGCCATCTTCATCTATGACGAGACCCGTCGTTTCTACTTGCGC
CGCAACCCCGGAGGCTGGTTGGAGCAGGAGACCTACTATTAAAAGCTTTC
TAGACCAT
BS31733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-RA | 3126 | CG5670-PA | 1..3126 | 17..3142 | 15630 | 100 | Plus |
| Atpalpha-RK | 3009 | CG5670-PK | 1..3009 | 134..3142 | 15045 | 100 | Plus |
| Atpalpha-RJ | 3009 | CG5670-PJ | 1..3009 | 134..3142 | 15045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-RA | 3558 | CG5670-RA | 25..3153 | 15..3143 | 15645 | 100 | Plus |
| Atpalpha-RE | 5033 | CG5670-RE | 577..3681 | 39..3143 | 15525 | 100 | Plus |
| Atpalpha-RB | 3861 | CG5670-RB | 428..3456 | 115..3143 | 15130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20964255..20966040 | 518..2303 | 8930 | 100 | Plus |
| 3R | 32079331 | 3R | 20963927..20964194 | 254..521 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 20973505..20973738 | 2788..3021 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 20966396..20966615 | 2301..2520 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 20973171..20973347 | 2612..2788 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 20963723..20963857 | 120..254 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 20973811..20973932 | 3022..3143 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 20967107..20967204 | 2518..2615 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 20962213..20962295 | 39..121 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 3376..3668 | 2138..2430 | 340 | 74.4 | Plus |
| 4 | 1348131 | 4 | 2350..2499 | 1103..1252 | 225 | 76.7 | Plus |
| 2R | 25286936 | 2R | 23931450..23931536 | 1244..1158 | 195 | 81.6 | Minus |
Blast to na_te.dros performed 2014-11-28 13:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 1060..1114 | 200..257 | 130 | 72.4 | Plus |
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 398..451 | 257..201 | 125 | 71.9 | Minus |
BS31733.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:40 Download gff for
BS31733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RA | 93..3216 | 17..3140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:03 Download gff for
BS31733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RA | 93..3216 | 17..3140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:37 Download gff for
BS31733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RA | 27..3150 | 17..3140 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:37 Download gff for
BS31733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20948806..20948829 | 17..40 | 100 | -> | Plus |
| 3R | 20962215..20962295 | 41..121 | 100 | -> | Plus |
| 3R | 20963725..20963856 | 122..253 | 100 | -> | Plus |
| 3R | 20963927..20964193 | 254..520 | 100 | -> | Plus |
| 3R | 20964258..20966039 | 521..2302 | 100 | -> | Plus |
| 3R | 20966398..20966613 | 2303..2518 | 100 | -> | Plus |
| 3R | 20967108..20967202 | 2519..2613 | 100 | -> | Plus |
| 3R | 20973173..20973347 | 2614..2788 | 100 | -> | Plus |
| 3R | 20973506..20973738 | 2789..3021 | 100 | -> | Plus |
| 3R | 20973811..20973929 | 3022..3140 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:03 Download gff for
BS31733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16799533..16799651 | 3022..3140 | 100 | | Plus |
| arm_3R | 16774528..16774551 | 17..40 | 100 | -> | Plus |
| arm_3R | 16787937..16788017 | 41..121 | 100 | -> | Plus |
| arm_3R | 16789447..16789578 | 122..253 | 100 | -> | Plus |
| arm_3R | 16789649..16789915 | 254..520 | 100 | -> | Plus |
| arm_3R | 16789980..16791761 | 521..2302 | 100 | -> | Plus |
| arm_3R | 16792120..16792335 | 2303..2518 | 100 | -> | Plus |
| arm_3R | 16792830..16792924 | 2519..2613 | 100 | -> | Plus |
| arm_3R | 16798895..16799069 | 2614..2788 | 100 | -> | Plus |
| arm_3R | 16799228..16799460 | 2789..3021 | 100 | -> | Plus |
BS31733.pep Sequence
Translation from 16 to 3141
> BS31733.pep
MALRSDYEHGRADSYRVATVIATDDDNRTADGQYKSRRKMPAKVNKKENL
DDLKQELDIDFHKISPEELYQRFQTHPENGLSHAKAKENLERDGPNALTP
PKQTPEWVKFCKNLFGGFAMLLWIGAILCFVAYSIQASTSEEPADDNLYL
GIVLSAVVIVTGIFSYYQESKSSKIMESFKNMVPQFATVIREGEKLTLRA
EDLVLGDVVEVKFGDRIPADIRIIEARNFKVDNSSLTGESEPQSRGAEFT
HENPLETKNLAFFSTNAVEGTAKGVVISCGDHTVMGRIAGLASGLDTGET
PIAKEIHHFIHLITGVAVFLGVTFFVIAFILGYHWLDAVIFLIGIIVANV
PEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTSTICSDKTGTLT
QNRMTVAHMWFDNQIIEADTTEDQSGVQYDRTSPGFKALSRIATLCNRAE
FKGGQDGVPILKKEVSGDASEAALLKCMELALGDVMNIRKRNKKIAEVPF
NSTNKYQVSIHETEDTNDPRYLLVMKGAPERILERCSTIFINGKEKVLDE
EMKEAFNNAYMELGGLGERVLGFCDFMLPSDKYPNGFKFNTDDINFPIDN
LRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKAIAKSVG
IISEGNETVEDIAQRLNIPVSEVNPREAKAAVVHGAELRDVSSDQLDEIL
RYHTEIVFARTSPQQKLIIVEGCQRMGAIVAVTGDGVNDSPALKKADIGV
AMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS
NIPEISPFLAFILCDIPLPLGTVTILCIDLGTDMVPAISLAYEHAEADIM
KRPPRDPFNDKLVNSRLISMAYGQIGMIQAAAGFFVYFVIMAENGFLPKK
LFGIRKMWDSKAVNDLTDSYGQEWTYRDRKTLEYTCHTAFFISIVVVQWA
DLIICKTRRNSIFQQGMRNWALNFGLVFETVLAAFLSYCPGMEKGLRMYP
LKLVWWFPAIPFALAIFIYDETRRFYLRRNPGGWLEQETYY*
BS31733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-PA | 1041 | CG5670-PA | 1..1041 | 1..1041 | 5378 | 100 | Plus |
| Atpalpha-PK | 1002 | CG5670-PK | 1..1002 | 40..1041 | 5177 | 100 | Plus |
| Atpalpha-PJ | 1002 | CG5670-PJ | 1..1002 | 40..1041 | 5177 | 100 | Plus |
| Atpalpha-PE | 1002 | CG5670-PE | 1..1002 | 40..1041 | 5177 | 100 | Plus |
| Atpalpha-PC | 1002 | CG5670-PC | 1..1002 | 40..1041 | 5177 | 100 | Plus |
