BS31743.complete Sequence
1817 bp assembled on 2012-09-25
GenBank Submission: KX801790
> BS31743.complete
GAAGTTATCAGTCGACATGGATGAGCACGATATATTTAAATTGATTACGG
CGGGCGTTCGCTTCACCAAGAAGTCAAAGAAGGAACCTTCATCAAAACAA
CAACTGCAGCCACTGCCGGAGGTTTCTAAACATGAGGAGCCGGTGAAAAG
CGAAGAGTCAGATAAAGATGATGAAGATATCACAGAGTTCCGTCTCTTGG
ACGGGGATTCCAGCAATCAACCGAAACGCAAGAAGCCGAAGAAAGAGAAG
ACACTATCCCCCAAGGAATTAGAGATTCAAAAGGCAGCCGAAGAGGCAAA
CGAGACGCGGAAGCAGTATGGCATTAGGGTGTTGGGCAAGAATGTTCCTC
CACCGGTGGACAGTTTCGGAACATTGACCAGGGACTTTAAGATGCTGCCT
CGCCTGCAGCAGAACCTACTGTCTCGCAACTTTGACCACCCCACGCCGAT
CCAGATGCAGGCCCTGCCCGTACTCCTCCAGCGACGGGCGCTAATGGCCT
GTGCACCCACTGGATCCGGCAAAACGCTGGCCTTCCTCACACCCATCATA
AATGGCCTGAGGGCGCACAAGACAACTGGACTGAGAGCTCTGGTCCTTGC
TCCCACTCGCGAGTTGGCCCAGCAAATCTACCGCGAGTGTGCGGAACTCA
CCCGTGAAACGGGTTTGCGCACCCACTTCATAAGCAAGGTGAGCGAGGCC
AAGCAGAAACATGGTGCGGAGTGCAAGCAACGGTACGACATCCTGGTCTC
CACGCCAAACCGCGTGAGGTTCCTCCTGCAGCAGGAGCCACCACTGCTGG
ATTTGTCCCACGTCGAGTGGTTCGTGCTGGACGAAGCAGATCGCCTGATG
GAGGAAGGGCAAAACAACTTCAAAGAGCAGTTAGACGACATATATGCCGC
GTGCTCAAATCCAACCAAGTGCGTGGCCTTCTTTAGTGCGACCTACACTG
TGCCAGTGGCTAAATGGGCTCTACGTCACCTCAAAAACCTAGTGCGCATA
ACCATTGGAGTGCAAAATAGCGCCACGGAAACGGTTCAACAGGAGCTGCT
GTTCGTCGGATCCGAGGGCGGTAAGCTGGTGGCCATACGAGACCTTGTGC
GCCAGGGTCTCCAGCCGCCGGTGCTTGTTTTCGTTCAAAGCAAGGAACGT
GCCAAGCAGCTGTTCGAGGAGCTGCTCTACGACGGCATCAACGTGGACGT
GATCCATGCCGAAAGGAGTCAACATCAGCGCGACAACTGCGTGAAAGCTT
TCCGAGAGGGCAGCATTTGGGTGCTCATCTGTACGGAGCTCATGGGCCGC
GGCATTGACTTCAAGGGTGTCAATCTGGTGATCAACTACGACTTTCCGCC
CACTACCATTTCGTACATTCATCGGATCGGCAGAACGGGACGTGCTGGAC
GACCGGGACGCGCAATTACGTTTTTCACACAAGAGGACACGTCCAATTTG
AGAGGCATCGCGCTTATAATAAAAAACTCTGGGGGAACCGTTCCGGAATA
TATGTTGCAAATGAAAAAGGTTCGCAAATCGGAGGCCAAGATGCGAGCCA
AGAAACCGTTGGATCGCGAGGACATTTCGACCAAGATACGACCGGAGACG
AAAGGCGACGAGAAGCACAAATCCACCAAATTGAAAAAAGTTGAAAGAAC
CGAAAAAATCTTAAAAAATCGAAAGGGTTATGAAAAGGACTTAAATTCAA
AGCAGAAGAAGCTAGGCAATATTAAAACAGAACTTAAGCCAGCCGGCAAA
AGGAAAGGAAATGTAGAGAAAAAAACAAAAAATAAAAATAATCAAACTTG
AAAGCTTTCTAGACCAT
BS31743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5589-RA | 1785 | CG5589-PA | 1..1785 | 17..1801 | 8925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5589-RA | 2112 | CG5589-RA | 52..1836 | 17..1801 | 8925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17803173..17804550 | 1455..78 | 6890 | 100 | Minus |
| 3L | 28110227 | 3L | 17802766..17803112 | 1801..1455 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 17804602..17804664 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:12:36 has no hits.
BS31743.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 15:37:22 Download gff for
BS31743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5589-RA | 50..1833 | 17..1800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:25 Download gff for
BS31743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5589-RA | 52..1835 | 17..1800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:36 Download gff for
BS31743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5589-RA | 52..1835 | 17..1800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:36 Download gff for
BS31743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17802767..17803111 | 1456..1800 | 100 | <- | Minus |
| 3L | 17803173..17804548 | 80..1455 | 100 | <- | Minus |
| 3L | 17804602..17804664 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:25 Download gff for
BS31743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17795867..17796211 | 1456..1800 | 100 | <- | Minus |
| arm_3L | 17796273..17797648 | 80..1455 | 100 | <- | Minus |
| arm_3L | 17797702..17797764 | 17..79 | 100 | | Minus |
BS31743.pep Sequence
Translation from 16 to 1800
> BS31743.pep
MDEHDIFKLITAGVRFTKKSKKEPSSKQQLQPLPEVSKHEEPVKSEESDK
DDEDITEFRLLDGDSSNQPKRKKPKKEKTLSPKELEIQKAAEEANETRKQ
YGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQAL
PVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTREL
AQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRV
RFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPT
KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSE
GGKLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAER
SQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISY
IHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGTVPEYMLQMK
KVRKSEAKMRAKKPLDREDISTKIRPETKGDEKHKSTKLKKVERTEKILK
NRKGYEKDLNSKQKKLGNIKTELKPAGKRKGNVEKKTKNKNNQT*
BS31743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5589-PA | 594 | CG5589-PA | 1..594 | 1..594 | 3052 | 100 | Plus |
| CG7878-PA | 703 | CG7878-PA | 194..674 | 45..511 | 522 | 30.1 | Plus |
| CG10333-PA | 822 | CG10333-PA | 325..776 | 54..476 | 507 | 30.6 | Plus |
| bel-PA | 798 | CG9748-PA | 283..704 | 103..511 | 502 | 30.6 | Plus |
| bel-PB | 801 | CG9748-PB | 283..704 | 103..511 | 502 | 30.6 | Plus |
