BS31750.complete Sequence
2864 bp assembled on 2012-09-26
GenBank Submission: KX804852
> BS31750.complete
GAAGTTATCAGTCGACATGACTGGCAGCTTTAAGGTGCAACTCATCAACA
TGGGCACTCGCGCTGCCGCCTTTCAGGCAAAACTGAGAGCCCTTCATGAA
TACCACGTTCGTCTACTGCACAACGTCTTGCCTGCGCCCTCTGGCGTCGA
TATTGCTAACAATATCAAATACTTTTCTCAAACTCTACTAACTGTCCTTA
AGGATGTGCGCACTTCGCCGCACGAGCTTATCCGCGATCCTCTTGAAGAT
CCCACTCGCATGTCTGCCTATCCCAATCTCGAATATGGCAACCTCTACAA
TGCTCTTACAATGCTCATCGATGTGGCACCTTGCATCCAGTACGGCCAAA
TCGTGTTCGGAAAAGCTCTATTGCAGTGCCTAAGCTGCATCCTTCCCTTT
CTGGACAAAGATCTTATCGATAATCTACCCTATCTTGTAAGCTCTACTAT
ATCAGTACTACCACCAGCGTTGCACCAATGCATCATCAATGCTCTATGCT
ACTATATCTTGCCTTTTACTATAACTCGTCGCAGCTCCGACGAACAGGAA
TGTCAGGCCTGCCAATCAGTGTCCTCGGTCATCATGATGGTGCTCCAGTA
CTCCAACAATCCAGCGCATCATTGCCAGCTCCTGGAGTGCCTGATGACTC
TTAAGCACAATGTCGTCAAGGACATCCTCTGCGTTGTGGCATACGGAACC
GCTGTTTCCCGCACCTCGGCTGCCAAGCTGCTCTTCTACTACTGGCCAGC
TTTTAACGCCAATCTGTTCGATCGCAAAGTCCTACTCTCCAAACTAACCA
ATGACCTAGTGCCCTTCACCTGCCAACGGGAGCACTGTCCGAACTCCGGG
AATGCGGAGGCAGCAAAGGTGTGCTACGACCACAGCATTAGCATCGCATA
CGCGCCCGATTGTCCACCGCCCCTTTACCTGTGCATCGAGTGCGCCAACG
AGATTCATCGGGAGCACGGAAGCCTGGAGTTCGGCGACATTCTGCATCCC
ATGCAGCAGGTATCGATGGTGTGCGAAAACAAGAACTGTCGCTCCAACGA
GAAGTCCGCCTTCTCCATCTGCTTCTCCACGGAGTGTGCCAGCTTCAATG
GCAACCATCCGATCCGCTACTGCAGCCAGTGCCACAGTAATAGGCACAAT
TCCCGGCGAGGTGGCGATCACGTGGTCCATCGCAGTCTGCAGCCCGCCTG
GCAGATGGATCCAGAGATGCAGATGCACATGGTGGAGTCGGTGGTAAGCC
TTCTGCGAGAGGCGAAGCCACTAAACTTTGAGCCCGGCAAGGAGTCCTCG
TCGTCCGAGTCCAAAAAGAACGGCTCCGGCATCACAGCTGACAATATTTC
TCTGGAGGAACGCCAGAGACTGGGACGCTATGGTATCTGGCTACTGGTGG
GTCGCTGTACACCCACTGCAGATACTCCCGTAGAAGTTCTGGGCAGGATT
CTGAGCATGCTCTTCCACTGGTTTCATGTAACCGCTTACTCATACGATGC
TGCCGGACAAGTGGAAAGTACCATTGAGAAGCTCAAAGTGGATCACGTTT
GCAACTGGCTGAAAGACATCTGCCGCATACACTACAACGTTTTCATATCC
TGCCTGCTGCCACATCCCCCGGAGTATGCCCGTGTTGGAGGCCACTGGGA
GACCTTGGCGTCGCGAACAAGCCACTTGAAAGAGGGTCTTCAGCGGCTTA
TATGCCTGGTGCCATATGAGGTTATCACTTCCGAAATTTGGGACTATGTG
ATGCCGCACTGGATGGAGGCCATCACCAACGACGTGGCCGAGAAGGAACT
GAACGAGCTGAAGATTGTGCTCAGCAAGATCCTCGATCCGGAAATGTCGC
CTCTGGGCTTTGATGCCAAAACCATGTACAACTTTGTGGCCATTCGATTT
GAGAAGACAACGGCAAAGGTGCAGCAGCAGGCACTCCACTGGCTGCAGAT
CCTCACCAAGCTGGAGATTCTCATTCCACTGGTCCAGTTGTTCGCCATGT
TCGGCGATGGTGTTCGCATAATGAAATACGGCATCCAGCACGAGCTGATG
CGCGAGAAGGATGCCCAATCTCAGTCCCTGGCCAAGGCTCCCAAGACCCC
GTGTAAAGAGAGCAAGGAGACCAAAGCGGATATGGCCAATCCGCCCAGGC
GTAGCTCTATTTCTCCTGTTGTCGAGGATGACTCTGGTAATACGTCTGCC
ATTTCGGATGACGAGGCGCCCACGAATCGTCACACGGAATTCTCCACGGA
TGCTGAGCACAATCTCACCTGTTGCATCCTCATGCTGGACATACTTCTGA
AGCAAATGGAACTACAGGACGTGGAGCAGCACATGGGCATCCATACGAGT
GTCTGCGAGAACGTCTCCAGGCTGATCAAGTGCATGGTCACTGCAGCTCG
AGTGGGTCTCAGTAGTCATGTCTGCGCCTTAAAGGTGGCAGAGTGTGCTT
ACTGCGAGGCATCCATCATGTGGCATCAGCTAGCTACCAAGTTGGTCCAG
TTCATGGCCCCATTGAATCCAGTCCGGCCACCAGATGTTCCCATCGAGGA
CATCATTGAGGAAGAAAAGTCCTCGCGCAAATCTCCACCCGAATCCGACA
AGGAAAAGACCCGTGATCGAGATGTTTCCCTCTCGATGGCTCCACTACCC
ATTCCGCTGGGACCTTTAGGAGGATTTGCAGGTACGCTCCAGGCTTTTCA
ACGCATTTCCCCCTTTACTTCAAGACCCTTAAACGAACCCCCGTTGTATC
ATAAAGTCTATAAAGTCCCAACAAAGTTTCTTTTCCAAAACCAACCCAAA
ACCTACCCACTTATAAATAAACTAACCACCGTAACAGTAAAGCAGTGAAA
GCTTTCTAGACCAT
BS31750.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc79-RD | 2832 | CG5237-PD | 1..2832 | 17..2848 | 14145 | 100 | Plus |
| unc79-RE | 8352 | CG5237-PE | 1..2667 | 17..2683 | 13320 | 100 | Plus |
| unc79-RF | 8346 | CG5237-PF | 1..2665 | 17..2681 | 13310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc79-RD | 3717 | CG5237-RD | 148..2981 | 17..2850 | 14155 | 100 | Plus |
| unc79-RE | 8596 | CG5237-RE | 148..2814 | 17..2683 | 13320 | 100 | Plus |
| unc79-RF | 8590 | CG5237-RF | 148..2812 | 17..2681 | 13310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19243930..19244628 | 1499..801 | 3495 | 100 | Minus |
| 3R | 32079331 | 3R | 19243216..19243879 | 2162..1499 | 3320 | 100 | Minus |
| 3R | 32079331 | 3R | 19242356..19242669 | 2850..2537 | 1570 | 100 | Minus |
| 3R | 32079331 | 3R | 19242885..19243159 | 2437..2163 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 19244685..19244964 | 804..525 | 1370 | 99.3 | Minus |
| 3R | 32079331 | 3R | 19245030..19245201 | 524..353 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 19245254..19245415 | 353..192 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 19245552..19245671 | 191..72 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 19242720..19242825 | 2538..2433 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 19245737..19245791 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:13:36 has no hits.
BS31750.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:03:31 Download gff for
BS31750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc79-RD | 147..2977 | 17..2847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:35 Download gff for
BS31750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc79-RD | 147..2977 | 17..2847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:58 Download gff for
BS31750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc79-RD | 148..2978 | 17..2847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:58 Download gff for
BS31750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19242359..19242669 | 2537..2847 | 100 | <- | Minus |
| 3R | 19242722..19242823 | 2435..2536 | 100 | <- | Minus |
| 3R | 19242888..19243159 | 2163..2434 | 100 | <- | Minus |
| 3R | 19243216..19243878 | 1500..2162 | 100 | <- | Minus |
| 3R | 19243930..19244628 | 801..1499 | 100 | <- | Minus |
| 3R | 19244689..19244964 | 525..800 | 99 | <- | Minus |
| 3R | 19245030..19245200 | 354..524 | 100 | <- | Minus |
| 3R | 19245254..19245415 | 192..353 | 100 | <- | Minus |
| 3R | 19245552..19245671 | 72..191 | 100 | <- | Minus |
| 3R | 19245737..19245791 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:35 Download gff for
BS31750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15068610..15068881 | 2163..2434 | 100 | <- | Minus |
| arm_3R | 15068081..15068391 | 2537..2847 | 100 | <- | Minus |
| arm_3R | 15068444..15068545 | 2435..2536 | 100 | <- | Minus |
| arm_3R | 15068938..15069600 | 1500..2162 | 100 | <- | Minus |
| arm_3R | 15069652..15070350 | 801..1499 | 100 | <- | Minus |
| arm_3R | 15070411..15070686 | 525..800 | 99 | <- | Minus |
| arm_3R | 15070752..15070922 | 354..524 | 100 | <- | Minus |
| arm_3R | 15070976..15071137 | 192..353 | 100 | <- | Minus |
| arm_3R | 15071274..15071393 | 72..191 | 100 | <- | Minus |
| arm_3R | 15071459..15071513 | 17..71 | 100 | | Minus |
BS31750.pep Sequence
Translation from 16 to 2847
> BS31750.pep
MTGSFKVQLINMGTRAAAFQAKLRALHEYHVRLLHNVLPAPSGVDIANNI
KYFSQTLLTVLKDVRTSPHELIRDPLEDPTRMSAYPNLEYGNLYNALTML
IDVAPCIQYGQIVFGKALLQCLSCILPFLDKDLIDNLPYLVSSTISVLPP
ALHQCIINALCYYILPFTITRRSSDEQECQACQSVSSVIMMVLQYSNNPA
HHCQLLECLMTLKHNVVKDILCVVAYGTAVSRTSAAKLLFYYWPAFNANL
FDRKVLLSKLTNDLVPFTCQREHCPNSGNAEAAKVCYDHSISIAYAPDCP
PPLYLCIECANEIHREHGSLEFGDILHPMQQVSMVCENKNCRSNEKSAFS
ICFSTECASFNGNHPIRYCSQCHSNRHNSRRGGDHVVHRSLQPAWQMDPE
MQMHMVESVVSLLREAKPLNFEPGKESSSSESKKNGSGITADNISLEERQ
RLGRYGIWLLVGRCTPTADTPVEVLGRILSMLFHWFHVTAYSYDAAGQVE
STIEKLKVDHVCNWLKDICRIHYNVFISCLLPHPPEYARVGGHWETLASR
TSHLKEGLQRLICLVPYEVITSEIWDYVMPHWMEAITNDVAEKELNELKI
VLSKILDPEMSPLGFDAKTMYNFVAIRFEKTTAKVQQQALHWLQILTKLE
ILIPLVQLFAMFGDGVRIMKYGIQHELMREKDAQSQSLAKAPKTPCKESK
ETKADMANPPRRSSISPVVEDDSGNTSAISDDEAPTNRHTEFSTDAEHNL
TCCILMLDILLKQMELQDVEQHMGIHTSVCENVSRLIKCMVTAARVGLSS
HVCALKVAECAYCEASIMWHQLATKLVQFMAPLNPVRPPDVPIEDIIEEE
KSSRKSPPESDKEKTRDRDVSLSMAPLPIPLGPLGGFAGTLQAFQRISPF
TSRPLNEPPLYHKVYKVPTKFLFQNQPKTYPLINKLTTVTVKQ*
BS31750.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc79-PD | 943 | CG5237-PD | 1..943 | 1..943 | 4995 | 100 | Plus |
| unc79-PE | 2783 | CG5237-PE | 1..889 | 1..889 | 4710 | 100 | Plus |
| unc79-PF | 2781 | CG5237-PF | 1..898 | 1..898 | 4705 | 99.1 | Plus |
| unc79-PC | 3028 | CG5237-PC | 1..898 | 1..898 | 4705 | 99.1 | Plus |
| unc79-PB | 2776 | CG5237-PB | 1..898 | 1..898 | 4705 | 99.1 | Plus |
