BS31758.complete Sequence
2288 bp assembled on 2012-09-26
GenBank Submission: KX806409
> BS31758.complete
GAAGTTATCAGTCGACATGTGTTGCCAATCAAGTGGCCAGTGGAAATTTC
CTGCGCAGCAGCCTCGAAAATCTTTGGCGTCAAGGCGGCGCCACACGGGA
TTTCGCCCAAGCACCCAGCTCCTGATCCTCATCGCAGTCCTGCTGGCCCT
GCTGCAAGGACGAACAGTCGACGCCGGGGCGGGAGATAGTCTATCGGGCG
TCCGGCAATCCTGCTCGAATGAGGGAGAAGAAGTCCAACTGAAGAACCAG
CCGCAGATTTTCACCTGCTTCAAGTGCGAATGCCAGAACGGATTCGTGAA
TTGCCGAGATACTTGTCCACCAGTCAATGACTGTTACATTCTGGATAAGT
CGAATGGAACTTGCTGCCGCAGGTGCAAGGGTTGCTCTTTTCGTGGCATG
TCGTATGAGAGTGGCTCGGAGTGGAACGATCCGGAGGATCCCTGCAAGAC
GTACAAGTGCGTGGCCACCGTGGTCACCGAGACGATCCAGAAGTGCTACT
CGCAGTGCGACAACAACCAGTTACAGCCACCACGACCGGGCGAATGCTGT
CCCACCTGTCAGGGTTGCAAGATCAACGGACAGACGGTGGCCGAGGGCCA
CGAGGTGGACGCCTCCATTGACGACCGCTGTCTGGTCTGCCAGTGCCGCG
GGACGCAGTTGACCTGTTCCAAGAAGACATGCCCGGTGCTACCGTGTCCC
ATGTCCAAGCAGATCAAGCGTCCGGATGAGTGCTGTCCGCGCTGCCCGCA
GAACCACAGTTTTCTACCTGTTCCAGGCAAATGCCTCTTCAACAAAAGCG
TTTATCCGGAGAAGACGCAGTTTATGCCGGACAGGTGTACGAACTGCACC
TGCCTGAACGGCACCTCCGTGTGCCAGCGACCCACCTGCCCGATCTTGGA
GTGCGCTCCCGAATTCCAGGAGCCAGATGGCTGCTGTCCACGCTGTGCGG
TGGCCGAAGTGCGGAGCGAGTGCAGCTTGGATGGGATTGTGTACCAGAAC
AACGAGACGTGGGACATGGGGCCGTGTCGCAGCTGCCGGTGCAATGGTGG
AACCATCCGGTGTGCCCAGATGCGCTGTCCGGCGGTCAAGTGCCGAGCGA
ACGAGGAGCTGAAACAGCCGCCGGGAGAATGTTGCCAACGGTGCGTGGAG
ACGGCGGGCACGTGCACCGTCTTCGGAGATCCTCACTTCCGTACCTTCGA
TGGCAAGTTCTTCAGCTTCCAGGGCAGCTGCAAGTACCTCCTGGCGTCCG
ACTGTATGGGCAAAACCTTCCACATCCGGCTGACGAACGAGGGACGCGGC
ACACGGCGTGCCAGCTGGGCCAAAACGGTGACCCTAAGTCTGCGAAACTT
GAAAGTCAATCTCGGCCAGCGAATGCGGGTCAAGGTGAATGGAACCAGGG
TAACGTTGCCCTACTTCGTTGTAGCCGGTGGCCAGAACGTGACGATTGAG
CGCTTGGCCAACGGAGGAGCGGTGATGCTGAGATCGGAAATGGGCTTGAC
CCTGGAGTGGAATGGAGCTGGCTTCCTGCAGGTTTCGGTGCCGGCGAAAT
TCAAGAAAAGACTGTGTGGTCTATGTGGCAACTTCAACGGCAGTTCGCGG
GACGATCTCACGGGGAAGGATGGACGGAGCCACGGGGACGACGAGGTCTG
GCACTTTGCCAATTCCTGGAAGGTGGGTGGCCCCAAGTCCTGTTCCCGCA
AGCGTGAATTCCTGGCTGCCACGCCCACCTGCGACAAGCGCAAATCGAAC
TTCTACTGCCACCCACTGAGTGTTCCCGCGCTCTTCGGCGAGTGCAACGA
GCGACTGAATCCGGAGAACTACAAGGCCGCCTGCCGGATGGACGTGTGTG
AGTGTCCATCGGGCGACTGTCACTGCGACAGCTTTGCGGCGTACGCCCAC
GAGTGCCGGCGACTCGGAGTCCAGTTGCCGGACTGGAGGAGCGCTACCAA
TTGCCCCGCAGGCTGGCGTCGCAATGCCACGTTGTCCAGCTTCAAGGGCA
ACCAGTTCTACGGTGATCCCAGCTTCAGCCGAATGAAGGGTCGGCGACAG
AAGAACCACCAGCTGCGACTGCAGCTGCAGCAGGAGCAGCAGCAGCGGAG
CAAACAGGGCCAAAAGGGGCGGCACAAGCCGGGTGGCCACAACCAGCTGG
ACAGGCAGGGCCACAACGGTCTGGACAAGGATCAGCTGCAGAAGGAGTTC
ATCCTGAAGCATGTGCCCAGCAGTTTCCTCTATCCGCGTGCGCCGGATCG
CACGCCGCCGCCCCTCCACTAAAAGCTTTCTAGACCAT
BS31758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-2-RA | 2256 | CG15671-PA | 1..2256 | 17..2272 | 11280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-2-RA | 4329 | CG15671-RA | 1083..3338 | 17..2272 | 11280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21356006..21357511 | 2272..767 | 7515 | 99.9 | Minus |
| 2R | 25286936 | 2R | 21357873..21358087 | 777..563 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 21358815..21359000 | 565..380 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 21366662..21366843 | 198..17 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 21359089..21359187 | 382..284 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 21363699..21363788 | 286..197 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:12:45 has no hits.
BS31758.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:03:29 Download gff for
BS31758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-2-RA | 1081..3334 | 17..2270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:30 Download gff for
BS31758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-2-RA | 1083..3336 | 17..2270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:39 Download gff for
BS31758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-2-RA | 1083..3336 | 17..2270 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:39 Download gff for
BS31758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21356008..21357501 | 777..2270 | 100 | <- | Minus |
| 2R | 21357874..21358086 | 564..776 | 100 | <- | Minus |
| 2R | 21358817..21358999 | 381..563 | 100 | <- | Minus |
| 2R | 21359091..21359184 | 287..380 | 100 | <- | Minus |
| 2R | 21363699..21363787 | 198..286 | 100 | <- | Minus |
| 2R | 21366663..21366843 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:30 Download gff for
BS31758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17243513..17245006 | 777..2270 | 100 | <- | Minus |
| arm_2R | 17245379..17245591 | 564..776 | 100 | <- | Minus |
| arm_2R | 17246322..17246504 | 381..563 | 100 | <- | Minus |
| arm_2R | 17246596..17246689 | 287..380 | 100 | <- | Minus |
| arm_2R | 17251204..17251292 | 198..286 | 100 | <- | Minus |
| arm_2R | 17254168..17254348 | 17..197 | 100 | | Minus |
BS31758.pep Sequence
Translation from 16 to 2271
> BS31758.pep
MCCQSSGQWKFPAQQPRKSLASRRRHTGFRPSTQLLILIAVLLALLQGRT
VDAGAGDSLSGVRQSCSNEGEEVQLKNQPQIFTCFKCECQNGFVNCRDTC
PPVNDCYILDKSNGTCCRRCKGCSFRGMSYESGSEWNDPEDPCKTYKCVA
TVVTETIQKCYSQCDNNQLQPPRPGECCPTCQGCKINGQTVAEGHEVDAS
IDDRCLVCQCRGTQLTCSKKTCPVLPCPMSKQIKRPDECCPRCPQNHSFL
PVPGKCLFNKSVYPEKTQFMPDRCTNCTCLNGTSVCQRPTCPILECAPEF
QEPDGCCPRCAVAEVRSECSLDGIVYQNNETWDMGPCRSCRCNGGTIRCA
QMRCPAVKCRANEELKQPPGECCQRCVETAGTCTVFGDPHFRTFDGKFFS
FQGSCKYLLASDCMGKTFHIRLTNEGRGTRRASWAKTVTLSLRNLKVNLG
QRMRVKVNGTRVTLPYFVVAGGQNVTIERLANGGAVMLRSEMGLTLEWNG
AGFLQVSVPAKFKKRLCGLCGNFNGSSRDDLTGKDGRSHGDDEVWHFANS
WKVGGPKSCSRKREFLAATPTCDKRKSNFYCHPLSVPALFGECNERLNPE
NYKAACRMDVCECPSGDCHCDSFAAYAHECRRLGVQLPDWRSATNCPAGW
RRNATLSSFKGNQFYGDPSFSRMKGRRQKNHQLRLQLQQEQQQRSKQGQK
GRHKPGGHNQLDRQGHNGLDKDQLQKEFILKHVPSSFLYPRAPDRTPPPL
H*
BS31758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-2-PA | 751 | CG15671-PA | 1..751 | 1..751 | 4220 | 100 | Plus |
| Hml-PB | 3842 | CG7002-PB | 1133..1608 | 194..647 | 292 | 26 | Plus |
| Hml-PA | 3843 | CG7002-PA | 1134..1609 | 194..647 | 292 | 26 | Plus |
| Hml-PB | 3842 | CG7002-PB | 789..1133 | 304..649 | 254 | 24.7 | Plus |
| Hml-PA | 3843 | CG7002-PA | 790..1134 | 304..649 | 254 | 24.7 | Plus |
| Hml-PB | 3842 | CG7002-PB | 484..754 | 383..647 | 216 | 26.3 | Plus |
| Hml-PA | 3843 | CG7002-PA | 485..755 | 383..647 | 216 | 26.3 | Plus |
| Hml-PB | 3842 | CG7002-PB | 2478..2969 | 205..646 | 187 | 21.5 | Plus |
| Hml-PA | 3843 | CG7002-PA | 2479..2970 | 205..646 | 187 | 21.5 | Plus |
