Clone BS31776 Report

Search the DGRC for BS31776

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:317
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha6-RA
Protein status:BS31776.pep: full length peptide match
Sequenced Size:872

Clone Sequence Records

BS31776.complete Sequence

872 bp assembled on 2012-08-22

GenBank Submission: KX804977

> BS31776.complete
GAAGTTATCAGTCGACATGTTTCGCAACCAGTACGATAGCGATGTTACTG
TGTGGAGTCCGCAGGGACGTCTCCACCAGGTGGAGTACGCAATGGAGGCC
GTGAAACTTGGCACCGCAACCGTGGGCCTGAAAAATAAAGATTACGCTGT
ACTTGTCGCCCTGTGTAAGCCGACATCGGAGCTATCGGATACCCAGCGCA
AGATCATCCCAATCGACGATCACCTGGGCATTTCCATTGCTGGCCTCACG
GCTGATGCCCGCGTCCTTAGCCGGTACTTGCGCTCCGAGTGCCTGAACTA
CAAGCACTCGTACGATACAACCTATCCAGTCTCGCGTCTGATCACTAACC
TGGGCAACAAGATGCAGACGACCACTCAGCGCTACGATCGCCGTCCGTAT
GGAGTGGGCCTTTTGGTCGCCGGCTACGATGAGAGGGGTCCGCACATCTA
TCAGGTCACGCCATCGGCGACCTTTTTCAATTGCAAGGCCAATTCGATCG
GATCGCGTTCACAGAGTGCACGCACCTATCTGGAGAAGAATTTGAACAAG
TTCTTGGACAGTTCCAAAGATGAAATCATCCGTCACGGAATTCGCGCTAT
ACTCGGTACCCTGCCTACGGATGAGCAAGGCAAAGATGCCGGTCAGTATG
ACATCACTGTGGCCATCGTCGGCAAAGACCAGCCATTCACAATTCTCTCT
AATAAAGACAGCGCCAAGCATGTGGCGATTGCCAAAGAGAATGACAATGA
TACGCCCAGGAACGACGATGACGATGATCGCCCATCCCCCCCAGAGGAAC
CAGCAGCCGGACCACGCGACCCAGAAGTCCTGGTTGCAACCGAGCAGCGT
CCATAGAAGCTTTCTAGACCAT

BS31776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6-RA 840 CG4904-PA 1..840 17..856 4200 100 Plus
Prosalpha6-RB 840 CG4904-PB 1..840 17..856 4200 100 Plus
Prosalpha6T-RA 870 CG5648-PA 37..519 53..535 315 71 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6-RA 1027 CG4904-RA 92..932 16..856 4205 100 Plus
Prosalpha6-RB 1070 CG4904-RB 92..932 16..856 4205 100 Plus
Prosalpha6T-RA 1020 CG5648-RA 106..588 53..535 315 71 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10221513..10222144 19..650 3160 100 Plus
2L 23513712 2L 10222202..10222408 650..856 1035 100 Plus
2L 23513712 2L 13232144..13232626 53..535 315 71 Plus
Blast to na_te.dros performed on 2014-11-28 12:39:05 has no hits.

BS31776.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:27:12 Download gff for BS31776.complete
Subject Subject Range Query Range Percent Splice Strand
Pros35-RA 97..930 23..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:22 Download gff for BS31776.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6-RB 99..932 23..856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:53 Download gff for BS31776.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha6-RB 99..932 23..856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:53 Download gff for BS31776.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10221517..10222143 23..649 100 -> Plus
2L 10222202..10222408 650..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:22 Download gff for BS31776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10221517..10222143 23..649 100 -> Plus
arm_2L 10222202..10222408 650..856 100   Plus

BS31776.pep Sequence

Translation from 16 to 855

> BS31776.pep
MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALC
KPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYD
TTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPS
ATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLP
TDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAKHVAIAKENDNDTPRND
DDDDRPSPPEEPAAGPRDPEVLVATEQRP*

BS31776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha6-PA 279 CG4904-PA 1..279 1..279 1456 100 Plus
Prosalpha6-PB 279 CG4904-PB 1..279 1..279 1456 100 Plus
Prosalpha6T-PA 289 CG5648-PA 1..280 1..275 827 57.7 Plus
Prosalpha4T2-PB 252 CG4569-PB 4..226 5..230 322 31.7 Plus
Prosalpha4T2-PA 252 CG4569-PA 4..226 5..230 322 31.7 Plus