BS31778.complete Sequence
1232 bp assembled on 2012-08-22
GenBank Submission: KX804701
> BS31778.complete
GAAGTTATCAGTCGACATGGCGCGCAAGAATGCCCAGGCGGAGGACCTCT
CCAACGTGGAGTTCGAGACGAGCGAGGATGTGGAGGTGATACCCACATTC
AACGCCATGAATCTAAAGGAGGAGCTGCTACGCGGCATCTACGCGTACGG
CTTCGAGAAACCCTCGGCCATTCAGCAAAGGAGCATTACGCCTATCGTCA
AGGGACGGGATGTGATTGCCCAGGCGCAATCAGGCACGGGCAAAACCGCC
ACCTTCTCCATCTCCATCCTGCAGAGCCTGGACACCACGCTGCGGGAGAC
GCAGGTTCTGTGCCTGTCGCCCACTCGCGAGTTGGCTGTGCAAATCCAGA
AAGTCATTCTTGCCCTCGGCGACATGATGAATGTCCAGTGCCATGTGTGC
ATCGGTGGCACCAACCTGGGCGAGGATATCCGCAAATTGGACTACGGTCA
ACACATTGTGAGCGGCACTCCAGGACGAGTCTTCGACATGATCAAGCGAC
GAGTGCTGCGAACAAGAGCCATCAAGATGCTAGTGCTGGACGAAGCTGAC
GAGATGCTTAATAAGGGTTTCAAGGAACAGATATACGATGTGTATCGCTA
CTTGCCACCAGCCACCCAGGTGGTGCTCATCTCAGCTACCTTGCCCCACG
AGATACTCGAGATGACCTCCAAATTTATGACAGATCCGATTCGCATCTTG
GTCAAGCGTGACGAATTGACACTGGAAGGCATCAAGCAGTTCTTCGTCGC
CGTGGAGCGCGAGGAATGGAAATTCGATACCCTGTGCGATCTGTACGATA
CTCTGACCATTACCCAGGCCGTCATCTTCTGCAACACGAAACGCAAGGTG
GACTGGCTGACGGAGAAGATGCGCGAGGCTAACTTTACAGTCAGCTCGAT
GCACGGCGATATGCCGCAAAAGGAGCGTGACGAGATCATGAAGGAGTTCC
GAGCCGGCCAGTCGCGAGTGCTCATCACCACCGATGTGTGGGCTCGGGGT
ATCGATGTACAGCAGGTGTCGCTGGTCATCAACTACGATTTGCCCAACAA
CCGTGAGCTGTACATCCATCGCATCGGTCGTTCTGGTCGTTTCGGACGCA
AAGGTGTTGCAATTAACTTTGTCAAATCGGACGATATCCGCATCCTGCGC
GACATTGAGCAGTACTACTCCACACAAATCGACGAGATGCCCATGAACGT
GGCTGACTTGATCTAAAAGCTTTCTAGACCAT
BS31778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4AIII-RA | 1200 | CG7483-PA | 1..1200 | 17..1216 | 5985 | 99.9 | Plus |
| eIF-4a-RF | 1212 | CG9075-PF | 115..1116 | 119..1120 | 510 | 70.1 | Plus |
| eIF-4a-RE | 1212 | CG9075-PE | 115..1116 | 119..1120 | 510 | 70.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4AIII-RA | 1481 | CG7483-RA | 129..1331 | 15..1217 | 6000 | 99.9 | Plus |
| eIF-4a-RF | 1939 | CG9075-RF | 341..1342 | 119..1120 | 510 | 70.1 | Plus |
| eIF-4a-RE | 2021 | CG9075-RE | 185..1186 | 119..1120 | 510 | 70.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8314205..8314714 | 708..1217 | 2550 | 100 | Plus |
| 3R | 32079331 | 3R | 8313530..8313897 | 149..516 | 1825 | 99.7 | Plus |
| 3R | 32079331 | 3R | 8313951..8314144 | 515..708 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 8313336..8313471 | 15..150 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 5984470..5984614 | 693..837 | 260 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:49:02 has no hits.
BS31778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:27:14 Download gff for
BS31778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 125..1322 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:30 Download gff for
BS31778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 131..1328 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:28 Download gff for
BS31778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 131..1328 | 17..1214 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:28 Download gff for
BS31778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8313338..8313470 | 17..149 | 100 | -> | Plus |
| 3R | 8313531..8313897 | 150..516 | 99 | -> | Plus |
| 3R | 8313953..8314144 | 517..708 | 100 | -> | Plus |
| 3R | 8314206..8314711 | 709..1214 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:30 Download gff for
BS31778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4139060..4139192 | 17..149 | 100 | -> | Plus |
| arm_3R | 4139253..4139619 | 150..516 | 99 | -> | Plus |
| arm_3R | 4139675..4139866 | 517..708 | 100 | -> | Plus |
| arm_3R | 4139928..4140433 | 709..1214 | 100 | | Plus |
BS31778.pep Sequence
Translation from 16 to 1215
> BS31778.pep
MARKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPS
AIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCL
SPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSG
TPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT
QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREE
WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP
QKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI*
BS31778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4AIII-PA | 399 | CG7483-PA | 1..399 | 1..399 | 2029 | 100 | Plus |
| eIF-4a-PF | 403 | CG9075-PF | 27..403 | 23..399 | 1398 | 70.6 | Plus |
| eIF-4a-PE | 403 | CG9075-PE | 27..403 | 23..399 | 1398 | 70.6 | Plus |
| eIF-4a-PD | 403 | CG9075-PD | 27..403 | 23..399 | 1398 | 70.6 | Plus |
| eIF-4a-PB | 403 | CG9075-PB | 27..403 | 23..399 | 1398 | 70.6 | Plus |
