BS31780.complete Sequence
1553 bp assembled on 2012-08-22
GenBank Submission: KX805671
> BS31780.complete
GAAGTTATCAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACT
ATAAGGATAAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAG
GTTCTGCTGGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGAT
CATCATCTGCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGG
AGATGTTCAAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAG
ATGCTCAAGAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCT
CGGGCTCAGCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTG
TTTTCCACATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCC
ATCGATATGAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGA
AATGAAGCAGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACT
GCGACCAGGATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCG
GAGGATCTTATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGC
CATTACGCCGGATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAA
AGCGTCTGGCGGAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTC
ATCATCGCACGTCCCAGCATCGTAACTCCAGCTGTCGCTGAGCCTCTGCC
AGGTTGGGTGGACAATATGAACGGACCTACGGGAGTTCTCATTGGCGCCG
GCAAAGGAGTTATCCGATCCATGATCTGCAACGGGGAGCTAAAATCTGAA
GTGATACCTGTGGACATCGCCATTAACGGTCTTATCTTATTACCATATCA
TAACAGTCTTGCGGAGAAGAGACCTCTTCAGATCCCAGTCTACAACTTGA
CCGTGGACGATGCCAAAAAGCGCACATGGAAATGGATAATGGATGTGGGT
CGCGACTTGGGCATTAAGTACCCCTTCGAAGTGGGACTCTGGTATCCCGA
CGGCAACATGACGTCCAGCAAATTCTATCACACCATCTGTACCATTCTGT
TTATGTGGCTGCCAGCCTACCTTATCGACTTCCTACTCCTGATCTTTGGA
CAACGTCGCTTCATGATTCGGGTTCAAACCAAAATCGCTGTGGGTTTGGA
AGTTTTGCAGTTCTTTACCACGCGAAGCTGGGACTTTAAATCCACACACT
TCGAGCAGATCTACAAGGAATTAGGATCCACAGATCGGAGGATATTTAAG
ATTAACACCGACGATGTCGACGATTATGAGTACATGAAAGTCAGTATTTT
GGGTGGCCGTCAGTATGTGATGAAGGAACCTTTAACTTCGTTGCCGAAAT
CACGCATACAATTGAGATTCATGTATGTCCTGGACCGTATTTGCAAAACG
ATGATAATTTCAGGCCTTCTATATTGGGTTTCCCAAAAACTGAGAGTAGT
TGACCTATTTAGAAGCGTATTCCATTCTAGTACATAAAAGCTTTCTAGAC
CAT
BS31780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RG | 1521 | CG30427-PG | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| CG30427-RC | 1521 | CG30427-PC | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| CG30427-RF | 1500 | CG30427-PF | 1..761 | 17..777 | 3580 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RG | 1785 | CG30427-RG | 112..1632 | 17..1537 | 7605 | 100 | Plus |
| CG30427-RC | 1852 | CG30427-RC | 179..1699 | 17..1537 | 7605 | 100 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 1902..2717 | 722..1537 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24934058..24934483 | 722..297 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 296..17 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24929479..24929720 | 1161..920 | 1210 | 100 | Minus |
| 2R | 25286936 | 2R | 24929772..24929971 | 921..722 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 24929279..24929410 | 1293..1162 | 660 | 100 | Minus |
| 2R | 25286936 | 2R | 24929073..24929198 | 1419..1294 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24928900..24929017 | 1537..1420 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:49:49 has no hits.
BS31780.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:27:15 Download gff for
BS31780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RC | 173..1691 | 17..1535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:38 Download gff for
BS31780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RC | 179..1697 | 17..1535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:46 Download gff for
BS31780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RC | 179..1697 | 17..1535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:46 Download gff for
BS31780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24929772..24929970 | 723..921 | 100 | <- | Minus |
| 2R | 24934058..24934483 | 297..722 | 100 | <- | Minus |
| 2R | 24934552..24934831 | 17..296 | 100 | | Minus |
| 2R | 24929279..24929410 | 1162..1293 | 100 | <- | Minus |
| 2R | 24929479..24929718 | 922..1161 | 100 | <- | Minus |
| 2R | 24929073..24929198 | 1294..1419 | 100 | <- | Minus |
| 2R | 24928902..24929017 | 1420..1535 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:38 Download gff for
BS31780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20816802..20816933 | 1162..1293 | 100 | <- | Minus |
| arm_2R | 20816425..20816540 | 1420..1535 | 100 | <- | Minus |
| arm_2R | 20816596..20816721 | 1294..1419 | 100 | <- | Minus |
| arm_2R | 20817002..20817241 | 922..1161 | 100 | <- | Minus |
| arm_2R | 20817295..20817493 | 723..921 | 100 | <- | Minus |
| arm_2R | 20821581..20822006 | 297..722 | 100 | <- | Minus |
| arm_2R | 20822075..20822354 | 17..296 | 100 | | Minus |
BS31780.pep Sequence
Translation from 16 to 1536
> BS31780.pep
MTVDLSPVQEYYKDKTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRP
KRGKAPETRLEEMFKLPIFQRIKDERPEMLKRVTIYQGDVTFDQLGLSGE
SLKHVTENTNIVFHMAATLKLEGNLRDAIDMNLLGTRRALNVAKEMKQLE
AFIHLSTAFCNCDQDVMYEKVYEFPHKPEDLMRLAEWMDVKTLDAITPDL
LKPHPNTYTYSKRLAELLVRDHYESMPVIIARPSIVTPAVAEPLPGWVDN
MNGPTGVLIGAGKGVIRSMICNGELKSEVIPVDIAINGLILLPYHNSLAE
KRPLQIPVYNLTVDDAKKRTWKWIMDVGRDLGIKYPFEVGLWYPDGNMTS
SKFYHTICTILFMWLPAYLIDFLLLIFGQRRFMIRVQTKIAVGLEVLQFF
TTRSWDFKSTHFEQIYKELGSTDRRIFKINTDDVDDYEYMKVSILGGRQY
VMKEPLTSLPKSRIQLRFMYVLDRICKTMIISGLLYWVSQKLRVVDLFRS
VFHSST*
BS31780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PG | 506 | CG30427-PG | 1..506 | 1..506 | 2647 | 100 | Plus |
| CG30427-PC | 506 | CG30427-PC | 1..506 | 1..506 | 2647 | 100 | Plus |
| CG30427-PD | 499 | CG30427-PD | 1..488 | 1..487 | 1974 | 75.6 | Plus |
| CG30427-PA | 499 | CG30427-PA | 1..488 | 1..487 | 1974 | 75.6 | Plus |
| CG30427-PF | 499 | CG30427-PF | 1..499 | 1..498 | 1885 | 71.4 | Plus |
