BS31788.complete Sequence
1850 bp assembled on 2012-09-26
GenBank Submission: KX800703
> BS31788.complete
GAAGTTATCAGTCGACATGAAGGATGTGAAAGTGGCGCGCGCAATTAGCG
AGTCCTCGACTACGTCAGATAACACCTCCGATTTCATCGAGATCGTAAAG
AAGTACGATGTGGTGTACAACAACCACAATCCGGATTACAAGAACGTTGA
AGTGAAGCTGAAGGTTTGGACGCAAATCGCCGATGAGATAGGTCTTTCAG
TGGAGGCCTCGAAACGGAAATGGAAAAATCTAAGGGACAGTTATACAAAG
TATCTTCGCTCGTTTCGCGTAGGCACAAAGACATCCAAGAAGTACCAGTA
CTGGGCCCATGCAGATCACATGGATTTCCTAAAGCCCTTCCAGGGACCGG
GCAGGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACA
GAGTGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGG
CGAGGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCAT
CCATGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACT
TCGGCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATAT
GATCTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCG
TGGGACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGT
CTAAACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCAC
CAGTGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCAT
CCTCAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCC
CTGGCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACT
GGCCCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTG
CTGGTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGC
AGCGCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTT
TGCGGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTG
GAGCACCTTTGGGATTGTTCCAGAACCTGGCCAACCAAGTGCAGAACGCC
AATCGTTTGAACGGCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCC
TCCGCCGCCGCCGCCAGCGCCACCAGCCTCCAAGGTGCGAAGGGTACAAC
CTTCGCCGCAAACCACGGCCATCAACCTAAGTTGCTCCGGAGGGAATTCC
GTACAAACGCAGCAGCAGCAGTCAATGCAAATGCCACAAATTCAACAGCA
ACAACAGCCGTCGCCCGCCAAAACGCGTAAGATTTGCGATCCGCGTTTTC
CGAGCGATTGGGACGTCTCTGCCGTGCTACAGGCCAACAGAGAACTTGAC
GCAAACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGGTGCGAGCTATGCC
CATGAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGCGAATCGTCAGTG
ATTTGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGTGGAGCGCCACCG
CCGGATGATTCAGGCGGAGGAGGAGCTGGGAATCTCAAGTACTGCAGCAT
AGATACTCCGCCACCGCCGCCGCAGGACGGCTCCGTGGTCATACCCCCGC
CGCCAGTCGGCCCCGAGGGCTCCACGGAGCACTTTGTGTATGTGATGTCG
CCGTCGCGTGTGGAGAGCATGATAGACATCTCCTCCGACGAGGAGGCGAC
CATGAATGGAGCGCCCTCCACGGGCCAGGTTTAAAAGCTTTCTAGACCAT
BS31788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13204-RA | 1818 | CG13204-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| CG13204-RB | 1515 | CG13204-PB | 1..1515 | 320..1834 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13204-RA | 2074 | CG13204-RA | 205..2023 | 16..1834 | 9095 | 100 | Plus |
| CG13204-RB | 1797 | CG13204-RB | 116..1746 | 204..1834 | 8155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11368755..11370236 | 353..1834 | 7410 | 100 | Plus |
| 2R | 25286936 | 2R | 11366914..11367101 | 16..203 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 11368547..11368699 | 203..355 | 765 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6854 | 1303..1364 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2402 | 1303..1360 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6797 | 1310..1374 | 123 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6806 | 1310..1364 | 122 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2394 | 1303..1358 | 119 | 73.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6899 | 1303..1358 | 116 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2427 | 1309..1358 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6863..6923 | 1299..1358 | 114 | 69.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1132 | 1304..1360 | 114 | 66.7 | Plus |
BS31788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:03:43 Download gff for
BS31788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13204-RA | 205..2020 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:59 Download gff for
BS31788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13204-RA | 206..2021 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:48 Download gff for
BS31788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13204-RA | 206..2021 | 17..1832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:48 Download gff for
BS31788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11366915..11367101 | 17..203 | 100 | -> | Plus |
| 2R | 11368548..11368698 | 204..354 | 100 | -> | Plus |
| 2R | 11368757..11370234 | 355..1832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:59 Download gff for
BS31788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7254420..7254606 | 17..203 | 100 | -> | Plus |
| arm_2R | 7256053..7256203 | 204..354 | 100 | -> | Plus |
| arm_2R | 7256262..7257739 | 355..1832 | 100 | | Plus |
BS31788.pep Sequence
Translation from 16 to 1833
> BS31788.pep
MKDVKVARAISESSTTSDNTSDFIEIVKKYDVVYNNHNPDYKNVEVKLKV
WTQIADEIGLSVEASKRKWKNLRDSYTKYLRSFRVGTKTSKKYQYWAHAD
HMDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELK
ITIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGS
NLGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNS
AVVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMF
PLATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADN
FKKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPP
APPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSP
AKTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQS
LAKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPP
PPQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAP
STGQV*
BS31788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13204-PA | 605 | CG13204-PA | 1..605 | 1..605 | 3146 | 100 | Plus |
| CG13204-PB | 504 | CG13204-PB | 1..504 | 102..605 | 2615 | 100 | Plus |
