BS31794.complete Sequence
2066 bp assembled on 2012-09-26
GenBank Submission: KX802217
> BS31794.complete
GAAGTTATCAGTCGACATGTTTCCGAACCAGAACAATGGAGCCGCTCCTG
GGCAGGGTCCAGCAGTTGATGGCCAACAGAGCCTCAACTACAACGGCCTG
CCCGCCCAGCAGCAGCAGCAATTGGCACAGTCCACGAAAAATGTGCGAAA
GAAGCCCTACGTAAAGATCACCGAACAACCGGCAGGAAAGGCGCTAAGGT
TTCGCTACGAGTGCGAGGGACGCTCGGCGGGATCCATTCCGGGCGTGAAC
TCTACGCCGGAGAACAAGACCTATCCGACAATCGAAATTGTGGGCTACAA
GGGACGCGCCGTAGTTGTTGTCTCCTGCGTCACAAAGGATACGCCATATC
GTCCTCATCCCCACAATTTAGTTGGCAAGGAGGGCTGCAAGAAGGGCGTC
TGTACACTGGAGATCAACAGTGAGACAATGCGAGCGGTGTTCAGTAACTT
GGGTATCCAGTGTGTCAAAAAGAAGGACATTGAGGCGGCGCTCAAGGCGC
GCGAGGAGATCCGTGTGGATCCGTTTAAGACTGGCTTTTCGCATCGTTTC
CAGCCCTCGAGCATAGATCTGAATTCGGTGCGATTGTGCTTTCAAGTATT
CATGGAGAGCGAGCAGAAGGGTCGATTCACCTCGCCACTGCCGCCGGTAG
TTTCGGAGCCCATCTTCGATAAGAAGGCCATGTCCGACCTGGTCATCTGC
CGGCTGTGTAGCTGCTCGGCCACCGTTTTCGGCAACACCCAGATCATCCT
GCTCTGCGAGAAGGTGGCCAAGGAGGACATCTCCGTGCGATTCTTTGAGG
AGAAGAATGGCCAGAGTGTTTGGGAGGCCTTTGGTGACTTCCAGCACACG
GATGTCCACAAGCAGACTGCCATTACCTTTAAGACGCCGCGCTATCATAC
CCTGGACATCACAGAGCCCGCCAAGGTTTTTATTCAACTGCGACGTCCCT
CGGATGGAGTTACCAGCGAGGCCCTGCCCTTCGAGTACGTGCCAATGGAC
TCAGATCCAGCGCACTTGAGGCGGAAACGTCAGAAGACTGGCGGTGATCC
CATGCACCTGCTGCTCCAGCAGCAGCAGAAACAGCAATTGCAGAATGACC
ACCAGGATGGCAGACAAACTAACATGAATTGCTGGAATACACAAAACATA
CCGCCCATTAAAACGGAACCAAGAGATACCTCGCCACAACCCTTTGGGCT
TTCTTATCGGGCGCCTCCTGAGCTCACACCCTCGCCGCAGCCGCTGTCGC
CATCGAGCAACTACAACCACAACAGCACGCCCTCGCCCTACAACATGGCC
TCCGCGGTCACGCCCACCAATGGCCAGCAGCAACTGATGTCGCCCAACCA
TCCACAGCAGCAACAGCAACAGCAGCAATATGGAGCAACTGATCTGGGGA
GCAACTACAATCCGTTTGCCCAGCAGGTCCTTGCCCAGCAGCAGCAGCAT
CAGCAGCAGCAGCAACAGCACCAGCATCAGCACCAGCAGCAACACCAACA
GCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGTCCTTGCAATTTCATG
CCAATCCCTTTGGCAATCCTGGCGGCAATAGCTGGGAAAGTAAATTCTCG
GCGGCAGCTGTTGCAGCAGCGGCAGCAACTGCGACAGGAGCAGCACCTGC
CAACGGCAATAGCAATAATCTCAGCAATCTCAACAATCCCTTCACCATGC
ACAACCTGCTGACATCGGGCGGAGGTCCTGGCAACGCCAACAATCTGCAG
TGGAACCTGACCACAAATCATCTGCACAATCAGCATACGCTTCATCAGCA
GCAGCAGCTTCAGCAGCAGCAGCAGCAGCAGTACGACAATACTGCGCCCA
CCAACAACAATGCCAACCTTAATAACAATAATAACAATAATAATACCGCT
GGCAATCAAGCGGATAATAATGGGCCAACGCTCAGCAATCTGCTTAGCTT
CGATAGCGGGCAGTTGGTGCACATAAACTCAGAGGATCAGCAGATACTGC
GCCTCAATTCGGAAGATCTGCAGATATCGAACCTGTCCATATCCACGTAA
AAGCTTTCTAGACCAT
BS31794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dl-RB | 2034 | CG6667-PB | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| dl-RA | 2034 | CG6667-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| dl-RE | 2034 | CG6667-PE | 1..2034 | 17..2050 | 10170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dl-RB | 2833 | CG6667-RB | 582..2622 | 17..2057 | 10175 | 99.9 | Plus |
| dl-RA | 2489 | CG6667-RA | 238..2278 | 17..2057 | 10175 | 99.9 | Plus |
| dl-RE | 2504 | CG6667-RE | 253..2293 | 17..2057 | 10175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17437419..17438019 | 1774..1174 | 3005 | 100 | Minus |
| 2L | 23513712 | 2L | 17441938..17442334 | 927..531 | 1985 | 100 | Minus |
| 2L | 23513712 | 2L | 17442652..17442986 | 351..17 | 1675 | 100 | Minus |
| 2L | 23513712 | 2L | 17437041..17437324 | 2057..1774 | 1390 | 99.3 | Minus |
| 2L | 23513712 | 2L | 17442404..17442583 | 530..351 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 17439189..17439299 | 1113..1003 | 555 | 100 | Minus |
| 2L | 23513712 | 2L | 17441801..17441881 | 1004..924 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 17438150..17438212 | 1175..1113 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2824 | 1347..1841 | 470 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2855 | 1315..1860 | 465 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6950 | 1325..1556 | 381 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6913 | 1347..1534 | 375 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..3005 | 1067..1713 | 344 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6945 | 1325..1536 | 324 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2958 | 1054..1532 | 282 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2989 | 1254..1530 | 272 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..7005 | 1065..1533 | 237 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7200 | 1234..1667 | 194 | 55.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1156 | 1326..1384 | 140 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7209 | 1055..1490 | 135 | 54.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1153 | 1325..1410 | 131 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1122 | 1054..1107 | 126 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1503..1598 | 1309..1412 | 123 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1534..1585 | 1320..1377 | 123 | 74.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1124 | 1324..1389 | 119 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1544..1613 | 1054..1124 | 118 | 64.8 | Plus |
BS31794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:03:41 Download gff for
BS31794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dl-RA | 240..2265 | 23..2048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:53 Download gff for
BS31794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dl-RE | 259..2284 | 23..2048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:43 Download gff for
BS31794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dl-RE | 259..2284 | 23..2048 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:43 Download gff for
BS31794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17439190..17439297 | 1005..1112 | 100 | <- | Minus |
| 2L | 17441801..17441879 | 926..1004 | 100 | <- | Minus |
| 2L | 17437050..17437323 | 1775..2048 | 100 | <- | Minus |
| 2L | 17437419..17438017 | 1176..1774 | 100 | <- | Minus |
| 2L | 17438150..17438212 | 1113..1175 | 100 | <- | Minus |
| 2L | 17441940..17442334 | 531..925 | 100 | <- | Minus |
| 2L | 17442404..17442582 | 352..530 | 100 | <- | Minus |
| 2L | 17442652..17442980 | 23..351 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:53 Download gff for
BS31794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17439190..17439297 | 1005..1112 | 100 | <- | Minus |
| arm_2L | 17441801..17441879 | 926..1004 | 100 | <- | Minus |
| arm_2L | 17442652..17442980 | 23..351 | 100 | | Minus |
| arm_2L | 17437050..17437323 | 1775..2048 | 100 | <- | Minus |
| arm_2L | 17437419..17438017 | 1176..1774 | 100 | <- | Minus |
| arm_2L | 17438150..17438212 | 1113..1175 | 100 | <- | Minus |
| arm_2L | 17441940..17442334 | 531..925 | 100 | <- | Minus |
| arm_2L | 17442404..17442582 | 352..530 | 100 | <- | Minus |
BS31794.pep Sequence
Translation from 16 to 2049
> BS31794.pep
MFPNQNNGAAPGQGPAVDGQQSLNYNGLPAQQQQQLAQSTKNVRKKPYVK
ITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVV
VVSCVTKDTPYRPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCV
KKKDIEAALKAREEIRVDPFKTGFSHRFQPSSIDLNSVRLCFQVFMESEQ
KGRFTSPLPPVVSEPIFDKKAMSDLVICRLCSCSATVFGNTQIILLCEKV
AKEDISVRFFEEKNGQSVWEAFGDFQHTDVHKQTAITFKTPRYHTLDITE
PAKVFIQLRRPSDGVTSEALPFEYVPMDSDPAHLRRKRQKTGGDPMHLLL
QQQQKQQLQNDHQDGRQTNMNCWNTQNIPPIKTEPRDTSPQPFGLSYRAP
PELTPSPQPLSPSSNYNHNSTPSPYNMASAVTPTNGQQQLMSPNHPQQQQ
QQQQYGATDLGSNYNPFAQQVLAQQQQHQQQQQQHQHQHQQQHQQQQQQQ
QQQQQQSLQFHANPFGNPGGNSWESKFSAAAVAAAAATATGAAPANGNSN
NLSNLNNPFTMHNLLTSGGGPGNANNLQWNLTTNHLHNQHTLHQQQQLQQ
QQQQQYDNTAPTNNNANLNNNNNNNNTAGNQADNNGPTLSNLLSFDSGQL
VHINSEDQQILRLNSEDLQISNLSIST*
BS31794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dl-PB | 677 | CG6667-PB | 1..677 | 1..677 | 3604 | 100 | Plus |
| dl-PA | 677 | CG6667-PA | 1..677 | 1..677 | 3604 | 100 | Plus |
| dl-PE | 677 | CG6667-PE | 1..677 | 1..677 | 3604 | 100 | Plus |
| dl-PD | 677 | CG6667-PD | 1..677 | 1..677 | 3604 | 100 | Plus |
| dl-PC | 999 | CG6667-PC | 1..454 | 1..509 | 1769 | 71.1 | Plus |
