BS31811.complete Sequence
1958 bp assembled on 2012-09-26
GenBank Submission: KX801602
> BS31811.complete
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATGACTATAGAGTTGAT
CCTCATTCCACGGTAGAGTTTTTCAGATCGATGATTGCCTCTACTGCAAA
AGGTTCCACTTCCATGAGCATATCGTGGTCCATGCTCATAGGCGTTTTAT
CAATTTGGCTGGTGGTTCTGGCCCTGCTGCTCAAGCCAGTTGCTTTTATT
GGGAAAGTTCTGCGATGTTCATGCGTGCTGATGTTCGGCTTCTTCGTCGC
TGTTTTCTTGTACTTACTTATTCACGAGCAAGTCACGTTTGATACCCTGC
ATTATTATTGGATGCCCCAGTTGGATAGCTTTGACAGCATTTTGGCAACG
GCTCGCACGGCCCTCCTGATGGCCGGCGGAGCCTTGGGGCCCGGTTGGGG
CAGTATCATAACCTTGTCTAGCTACAACAACTTTCGCAGAGATGCCGAAA
GACTGAGTATCTGGGTGTGCCTTACTCATATTACCATTGGGTTAATGGGA
CTGCTCTGCTGCAATGTGGCCCACGATCACTTTGAGGATCACGTTGGTAT
GATGCCATTACATGTGGATGAGAAGCATCATATGCAGTTTCTGTATCTCT
GCTTCTCATACTTGTTTGGACGTTTTACGACGACTCCAAATCTCTGGGCA
TTTCTGTTCTTTGGCATGATATTTTTATCAGAACTATGTGCCTTGATCAT
TCAAATGATGTCCGTTATTACTGCCTTGTTCGATGAGTTCGAGACATTGC
GTTCAAGAAGAATTCTGGTAATTTCATCGCTAGTCTTCTGCCTCACAGCT
TCCTCTGTATATTTTTGTACTCAGTTGGGCTTTAGTCAGCTGACTCAGCT
GCCAAATTTGGCAGTGTTTACACACTTGCTTATTTCGGGAATCCTTGTGC
TGATGACCACTTGGGTTTATGGACGCGTTCGTTTCCAGTGCGACTTGCAG
TTTATGTTAGGCAAAACGATCTCAAGTTTCAAAATTTTCTTTATACGCTT
TGCCACGCCCATTTTTCTGGGACTGTGTCTGTTTCAACTAACCTATTTAT
TTACGCGTGATCGCATACACGATGTCCTGATTTATGTGAGTCAGGGCTTG
ATTCTCCTAACGGCCATATCTTATATGGTTTACAAGGTATGTCGGACGAA
TGGCGATTGGCGCCAGCGATTGCAACAGTGCCTCGCACCACATGACTGGC
ATCCGGTGGATGCGGACAACCGGCGATTCTACGAGGAAATCATGGGCATC
TCGGAGATGCTGGTTATAGATGCCAATGCCAACACCACATAGAAGCTTTC
TAGACCAT
BS31811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13796-RD | 1926 | CG13796-PD | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| CG13796-RC | 1926 | CG13796-PC | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| CG13796-RA | 1926 | CG13796-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13796-RD | 2711 | CG13796-RD | 444..2371 | 15..1942 | 9640 | 100 | Plus |
| CG13796-RC | 2652 | CG13796-RC | 385..2312 | 15..1942 | 9640 | 100 | Plus |
| CG13796-RA | 2749 | CG13796-RA | 482..2409 | 15..1942 | 9640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7730198..7730560 | 377..15 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7736338..7736700 | 377..15 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7728507..7728846 | 1187..848 | 1700 | 100 | Minus |
| 2L | 23513712 | 2L | 7727497..7727758 | 1942..1681 | 1310 | 100 | Minus |
| 2L | 23513712 | 2L | 7727829..7728039 | 1681..1471 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 7729179..7729357 | 686..508 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 7735319..7735497 | 686..508 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 7728285..7728443 | 1345..1187 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 7729418..7729550 | 510..378 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 7735558..7735690 | 510..378 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 7728096..7728225 | 1474..1345 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 7728904..7729026 | 847..725 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 7729085..7729125 | 726..686 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:16:57 has no hits.
BS31811.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:09:14 Download gff for
BS31811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13796-RC | 385..2310 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:10 Download gff for
BS31811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13796-RA | 484..2409 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:04 Download gff for
BS31811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13796-RA | 484..2409 | 17..1942 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:04 Download gff for
BS31811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7730198..7730558 | 17..377 | 100 | | Minus |
| 2L | 7727497..7727757 | 1682..1942 | 100 | <- | Minus |
| 2L | 7727829..7728035 | 1475..1681 | 100 | <- | Minus |
| 2L | 7728096..7728224 | 1346..1474 | 100 | <- | Minus |
| 2L | 7728285..7728442 | 1188..1345 | 100 | <- | Minus |
| 2L | 7728507..7728846 | 848..1187 | 100 | <- | Minus |
| 2L | 7728904..7729024 | 727..847 | 100 | <- | Minus |
| 2L | 7729085..7729125 | 686..726 | 100 | <- | Minus |
| 2L | 7729180..7729355 | 510..685 | 100 | <- | Minus |
| 2L | 7729419..7729550 | 378..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:10 Download gff for
BS31811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7728096..7728224 | 1346..1474 | 100 | <- | Minus |
| arm_2L | 7728285..7728442 | 1188..1345 | 100 | <- | Minus |
| arm_2L | 7727497..7727757 | 1682..1942 | 100 | <- | Minus |
| arm_2L | 7727829..7728035 | 1475..1681 | 100 | <- | Minus |
| arm_2L | 7728507..7728846 | 848..1187 | 100 | <- | Minus |
| arm_2L | 7728904..7729024 | 727..847 | 100 | <- | Minus |
| arm_2L | 7729085..7729125 | 686..726 | 100 | <- | Minus |
| arm_2L | 7729180..7729355 | 510..685 | 100 | <- | Minus |
| arm_2L | 7729419..7729550 | 378..509 | 100 | <- | Minus |
| arm_2L | 7730198..7730558 | 17..377 | 100 | | Minus |
BS31811.pep Sequence
Translation from 16 to 1941
> BS31811.pep
MKGICGEQLNNCMLLGDCENSEHGTELPGDFIGEPVETESGGGMGGSLAL
AARRIRSRQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTH
AFSSLIFSELSTFGILHGGWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSS
SGTISAFRVAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVI
PWMSCNNSWNTQECSLHENYDVDDYRVDPHSTVEFFRSMIASTAKGSTSM
SISWSMLIGVLSIWLVVLALLLKPVAFIGKVLRCSCVLMFGFFVAVFLYL
LIHEQVTFDTLHYYWMPQLDSFDSILATARTALLMAGGALGPGWGSIITL
SSYNNFRRDAERLSIWVCLTHITIGLMGLLCCNVAHDHFEDHVGMMPLHV
DEKHHMQFLYLCFSYLFGRFTTTPNLWAFLFFGMIFLSELCALIIQMMSV
ITALFDEFETLRSRRILVISSLVFCLTASSVYFCTQLGFSQLTQLPNLAV
FTHLLISGILVLMTTWVYGRVRFQCDLQFMLGKTISSFKIFFIRFATPIF
LGLCLFQLTYLFTRDRIHDVLIYVSQGLILLTAISYMVYKVCRTNGDWRQ
RLQQCLAPHDWHPVDADNRRFYEEIMGISEMLVIDANANTT*
BS31811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13796-PD | 641 | CG13796-PD | 1..641 | 1..641 | 3383 | 100 | Plus |
| CG13796-PC | 641 | CG13796-PC | 1..641 | 1..641 | 3383 | 100 | Plus |
| CG13796-PA | 641 | CG13796-PA | 1..641 | 1..641 | 3383 | 100 | Plus |
| CG13796-PB | 641 | CG13796-PB | 1..641 | 1..641 | 3383 | 100 | Plus |
| CG31904-PB | 403 | CG31904-PB | 1..223 | 1..223 | 1187 | 100 | Plus |
