BS31827.complete Sequence
815 bp assembled on 2012-08-22
GenBank Submission: KX800208
> BS31827.complete
GAAGTTATCAGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAG
GCGGAGCCCAGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTC
AACTCGATGGCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTT
CTCGGCATACCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACA
CCGCCGAGGAGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGGGCC
GTGGGCGGTGCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATC
GATGAGCGCCTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGC
TGTCCGACATCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAG
CCCCTGTTCATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAA
TGTGCCCACATCCACGCTGCGCGATCCGGAGGCTGATGATGTAGGTACCG
TGGAGTGGGTCGATTCGCTAATGCTGTTACCCATTTCCTCTTTAGCAACG
TGTGATCAAGCCCGAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGG
GCTGTGTGCCCATCGCGAACGCCGGCGACTGGGGTGGCTACTACTGCCCC
TGCCACGGCTCCCACTACGACGCCTCCGGAAGGATCCGCAAGGGACCCGC
GCCCCTCAACTTGGAGGTGCCCACCCACGAGTTCCCCAACGAGGGTCTTC
TCGTGGTCGGCTAGAGGAGCTGTTATCGTTTAAGCCCCCAACTGCATAGA
AGCTTTCTAGACCAT
BS31827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RFeSP-RE | 693 | CG7361-PE | 1..474 | 17..490 | 2355 | 99.8 | Plus |
| RFeSP-RD | 693 | CG7361-PD | 1..474 | 17..490 | 2355 | 99.8 | Plus |
| RFeSP-RB | 693 | CG7361-PB | 1..474 | 17..490 | 2355 | 99.8 | Plus |
| RFeSP-RE | 693 | CG7361-PE | 475..693 | 546..764 | 1095 | 100 | Plus |
| RFeSP-RD | 693 | CG7361-PD | 475..693 | 546..764 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RFeSP-RE | 1000 | CG7361-RE | 85..558 | 17..490 | 2355 | 99.8 | Plus |
| RFeSP-RD | 1118 | CG7361-RD | 85..558 | 17..490 | 2355 | 99.8 | Plus |
| RFeSP-RB | 851 | CG7361-RB | 85..558 | 17..490 | 2355 | 99.8 | Plus |
| RFeSP-RE | 1000 | CG7361-RE | 559..812 | 546..799 | 1270 | 100 | Plus |
| RFeSP-RD | 1118 | CG7361-RD | 559..812 | 546..799 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1612735..1613424 | 799..110 | 3435 | 99.9 | Minus |
| 2L | 23513712 | 2L | 1613983..1614076 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:51:53 has no hits.
BS31827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:27:23 Download gff for
BS31827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RFeSP-RA | 107..889 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:11 Download gff for
BS31827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RFeSP-RB | 85..564 | 17..496 | 99 | == | Plus |
| RFeSP-RB | 565..812 | 552..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:29 Download gff for
BS31827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RFeSP-RB | 85..564 | 17..496 | 99 | == | Plus |
| RFeSP-RB | 565..812 | 552..799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:29 Download gff for
BS31827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1612735..1613423 | 111..799 | 99 | <- | Minus |
| 2L | 1613983..1614076 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:11 Download gff for
BS31827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1612735..1613423 | 111..799 | 99 | <- | Minus |
| arm_2L | 1613983..1614076 | 17..110 | 100 | | Minus |
BS31827.pep Sequence
Translation from 16 to 798
> BS31827.pep
MMNAVSRAYVRGGAQVLSTGLKASGVAVNSMANRQAHTDLQVPDFSAYRR
ESVKDSRRRNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGSMSASA
EVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTST
LRDPEADDVGTVEWVDSLMLLPISSLATCDQARVAGGHRSVHASGLCAHR
ERRRLGWLLLPLPRLPLRRLRKDPQGTRAPQLGGAHPRVPQRGSSRGRLE
ELLSFKPPTA*
BS31827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RFeSP-PE | 230 | CG7361-PE | 1..167 | 1..165 | 790 | 95.8 | Plus |
| RFeSP-PD | 230 | CG7361-PD | 1..167 | 1..165 | 790 | 95.8 | Plus |
| RFeSP-PB | 230 | CG7361-PB | 1..167 | 1..165 | 790 | 95.8 | Plus |
