BS31845.complete Sequence
2681 bp assembled on 2012-11-15
GenBank Submission: KX804554
> BS31845.complete
GAAGTTATCAGTCGACATGGCCTCCTCCACATCCTCTGCGCGTGGGAACA
ACAAAGCAGCCACCACCAACACCACCGCAGCCACCGCTCCCGTCTCCACC
GCCTCGTCGGCTGCCGTTTCCGGTTCCGGTGCCACCTCCGCGGCAGCTAC
TGCCTCCGCTCCGCCAGCTGTGACCCTAAGCGAGCTGATTGGCCAGCAGC
TGAAGCACCTGAACGCCGATGAGCTGCTGCACAAGGACGAGCTGCAGCTG
CTCCTGCTCATAACGCCTGTGCAACGCCAGAAACTGAGCCGCAATCTGGA
GGATGGCGATCTGGAGGCCAGCACCTCGGCGGCGCCACTTTCGCGTCCCG
AAAACGGCGAGGAGGATGACGACCTGATTGGGGCGGTGGGCGGACTCGGT
ATTTCGTCCCCAACTACGACCAAGGAGCCGGTGCTAGATTTTAGGCCACA
CGTACTCAAATGGTTTCAACATCTGCGCCACCAAACGGGCCACTTCAAGT
CGGAGGAGGAGTCTCGTCGTCTGCGGGAGGCTGGTAACGATTCGTATCGC
AAGGAGCGGCATCCGCTCAAGGCCAGCGATCTATTCACGGAGGCCATATT
CCTGGCCCCCGCCCGGAACACGCTAGCAGCCGCCCTGGCCCACGCCAATC
GCTCCCTGGTTCTCTTTGATTGCGGTCTATATGCGGAATCCTACGACGAC
TGCCTGTGCGCCCTGGATCTGGGCTATCCGGAGGAGTACTTGCCATTGAT
TAAGCTGCGCCAAGCCGCCTGTGCCTTAAAACTGCGTAACTTTGCGCTCT
GCGAGGAGCATCTGCACGAGCTCCTGCACATTGAACTGAACCAGGTGTTC
GAAGCGAGGACCCATGAGCTCTGGCATCAGTGCGAAGTGCTCAAGGTGGA
GCGCTTCGAGATGGCCGTACAGACGGGCGATGATCTGGATATCAACGATT
CGAAAGCCTTTGAAATAGCCTGGTTGGACAACTCCTCGTCGCTGCACACA
ACCAGGGCGGTGGCCAAGAACGCGCTCATCTTCGAATCGGAAGCGGTGGC
CATGGTGCCGAGCGGCAATTGCCGAGTGTGTGACTACTGCGGGATCACAC
AGTTCATTCCCTTTCCCTGCATTTACTGCTCCAACCGTCTGGTGGTCTAT
TGTTCCCGACAGTGCCGCTTCAAGCATGCGGCGATCCATGCAGTGGAGTG
CTTCGGCCACCAGATCGAGCTGTTCGAGTCCTTTGGCGAGGTTTTCGGAA
TGCCGCGACTCCTGCAGCTGGCCTTCAGGATGCTGATCACAGGACTGCCG
GAACTTTTGGGCCATTGCCGAAAGAAACCGACGCTCAGCAAGCTTTGGTC
GGCCATCAATGGGGGATTGCAGGAGCGACAGGATATCGCTTACAGTGCAG
TGCTGCGATTGGAGCGCCTGAAGGAGGAGCGACCCACGGACACGGTGATC
GCATTGGCATTGGCCGCCCACATCCTGTCCATTTACCTGAGCAAGTGCAC
TACGTTTTTTGATCAGCTGGAGAAGAGTCTGCCTACGGCCTCTCGGATGT
CGAGTGCCGAATGGGAGCTGCTGTGTGCCGCTCTACTCATGCGTCACATT
GGCCAGCTGCGCCACAGATCGCTCACTGCCTGCCGATCCTTCGTCCTGCC
AGCTGATCCGCACGTCTTCTCGCCACTCAACGAATTCCAGCTATGGGCCG
CACCCATGCGCCTGCAGGAGGGCCATCTGCATCTGCTGGCCGGCGAGGTG
GCTGTCGTGTCGTACTCCGTCTACCCGGATACCCTGAACTTGTGCCGCCA
CAGTTGTTCCTCCACGATCTGCGCCAAGTTCTCCGGCCGCACGGTGACCG
CGCTGGCCCTTTTGGATCTGCCGGCAGGCTCCGGCATCTACAACTGCTTC
GCCGGAGGTAACTTTCAGCAATTGCCCCGGGAGGAGCGCACCAAACAGCT
CCTGGAGAGCGGCATAAGGTGCCACTGCAACGCCTGCCAGTTAACGCACT
CGGATGATCAGTTCCATAAGTTTCATCGCTACCGTTGTGATAACCCAAAC
TGTATGGAGATCTTCACACCCAACGCCCTGCCCCATGCTCCAAGTCTGCG
TTGGTGGCTATCCGAGGAGTACACCCAGCCGGAGTTCAATGGCGCCGACC
TGATCATGTGTCCACATTGCGGCGAGTACCAGAAACTGGAGTGGTTCTGG
GCCTTCACCACGTCGCTCATCGATTGCGAACTCATCGAGGAGAGGTGCAA
ACTGTACGCGGCCATCGAGCGCGCCGAGAACCAACTGATGGATCTGCACG
AGTGCAAGGTGGCTCTGGCCAGGCTGCTTCTGGAGCAGTGCCTCATGGTG
CACCGCGAGGGGGCCACAGTCCTGGACGATTGGGAGTTCAACAAACTGGG
CTCCATCCTCAGATCCGTGCTGCCCAGCGTGATGGCCCAGTATGGCGGAC
AGTCAATCGAGTACGTGAAGTACTTCTCCTACTTCTGGGATGTGATGGCG
CTGAGCAACTACAAGTGCAACGATCGGGAGCTGATGCAAATGCTAAATGC
TTTGGAGTTCATAGCCGACGAGTTCAAGGATATATTCATCAACTACTACG
AGGATTATATTGCGCCCAAATTTGCTGAAGAGTCCTATGGCAGTGTCGTA
GATACGCAAGTTTAGAAGCTTTCTAGACCAT
BS31845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dao-RB | 2649 | CG15267-PB | 1..2649 | 17..2665 | 13245 | 100 | Plus |
| dao-RA | 2649 | CG15267-PA | 1..2649 | 17..2665 | 13245 | 100 | Plus |
| dao-RC | 2427 | CG15267-PC | 1..2341 | 17..2357 | 11705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dao-RB | 4083 | CG15267-RB | 261..2910 | 17..2666 | 13250 | 100 | Plus |
| dao-RA | 2975 | CG15267-RA | 261..2910 | 17..2666 | 13250 | 100 | Plus |
| dao-RC | 2977 | CG15267-RC | 261..2601 | 17..2357 | 11705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15251343..15252390 | 967..2014 | 5240 | 100 | Plus |
| 2L | 23513712 | 2L | 15249139..15249567 | 17..445 | 2145 | 100 | Plus |
| 2L | 23513712 | 2L | 15252452..15252794 | 2015..2357 | 1715 | 100 | Plus |
| 2L | 23513712 | 2L | 15253233..15253542 | 2357..2666 | 1550 | 100 | Plus |
| 2L | 23513712 | 2L | 15251006..15251287 | 685..966 | 1410 | 100 | Plus |
| 2L | 23513712 | 2L | 15250646..15250889 | 443..686 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:00:33 has no hits.
BS31845.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-15 12:01:31 Download gff for
BS31845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dao-RA | 255..2903 | 17..2665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:24 Download gff for
BS31845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dao-RA | 261..2909 | 17..2665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:10 Download gff for
BS31845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dao-RA | 261..2909 | 17..2665 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:10 Download gff for
BS31845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15249139..15249566 | 17..444 | 100 | -> | Plus |
| 2L | 15250648..15250888 | 445..685 | 100 | -> | Plus |
| 2L | 15251007..15251287 | 686..966 | 100 | -> | Plus |
| 2L | 15251343..15252390 | 967..2014 | 100 | -> | Plus |
| 2L | 15252452..15252794 | 2015..2357 | 100 | -> | Plus |
| 2L | 15253234..15253541 | 2358..2665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:24 Download gff for
BS31845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15249139..15249566 | 17..444 | 100 | -> | Plus |
| arm_2L | 15250648..15250888 | 445..685 | 100 | -> | Plus |
| arm_2L | 15251007..15251287 | 686..966 | 100 | -> | Plus |
| arm_2L | 15251343..15252390 | 967..2014 | 100 | -> | Plus |
| arm_2L | 15252452..15252794 | 2015..2357 | 100 | -> | Plus |
| arm_2L | 15253234..15253541 | 2358..2665 | 100 | | Plus |
BS31845.pep Sequence
Translation from 16 to 2664
> BS31845.pep
MASSTSSARGNNKAATTNTTAATAPVSTASSAAVSGSGATSAAATASAPP
AVTLSELIGQQLKHLNADELLHKDELQLLLLITPVQRQKLSRNLEDGDLE
ASTSAAPLSRPENGEEDDDLIGAVGGLGISSPTTTKEPVLDFRPHVLKWF
QHLRHQTGHFKSEEESRRLREAGNDSYRKERHPLKASDLFTEAIFLAPAR
NTLAAALAHANRSLVLFDCGLYAESYDDCLCALDLGYPEEYLPLIKLRQA
ACALKLRNFALCEEHLHELLHIELNQVFEARTHELWHQCEVLKVERFEMA
VQTGDDLDINDSKAFEIAWLDNSSSLHTTRAVAKNALIFESEAVAMVPSG
NCRVCDYCGITQFIPFPCIYCSNRLVVYCSRQCRFKHAAIHAVECFGHQI
ELFESFGEVFGMPRLLQLAFRMLITGLPELLGHCRKKPTLSKLWSAINGG
LQERQDIAYSAVLRLERLKEERPTDTVIALALAAHILSIYLSKCTTFFDQ
LEKSLPTASRMSSAEWELLCAALLMRHIGQLRHRSLTACRSFVLPADPHV
FSPLNEFQLWAAPMRLQEGHLHLLAGEVAVVSYSVYPDTLNLCRHSCSST
ICAKFSGRTVTALALLDLPAGSGIYNCFAGGNFQQLPREERTKQLLESGI
RCHCNACQLTHSDDQFHKFHRYRCDNPNCMEIFTPNALPHAPSLRWWLSE
EYTQPEFNGADLIMCPHCGEYQKLEWFWAFTTSLIDCELIEERCKLYAAI
ERAENQLMDLHECKVALARLLLEQCLMVHREGATVLDDWEFNKLGSILRS
VLPSVMAQYGGQSIEYVKYFSYFWDVMALSNYKCNDRELMQMLNALEFIA
DEFKDIFINYYEDYIAPKFAEESYGSVVDTQV*
BS31845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dao-PB | 882 | CG15267-PB | 1..882 | 1..882 | 4648 | 100 | Plus |
| dao-PA | 882 | CG15267-PA | 1..882 | 1..882 | 4648 | 100 | Plus |
| dao-PC | 808 | CG15267-PC | 1..786 | 1..786 | 4115 | 99.4 | Plus |
| CG1868-PC | 751 | CG1868-PC | 42..749 | 142..865 | 868 | 31.3 | Plus |
| CG1868-PB | 751 | CG1868-PB | 42..749 | 142..865 | 868 | 31.3 | Plus |
