BS31848.complete Sequence
3137 bp assembled on 2012-09-26
GenBank Submission: KX804938
> BS31848.complete
GAAGTTATCAGTCGACATGGCGGGGGATCGTGCCTTAAGTTCCAAGCAAT
TGGCGGGGCGCATACATTCCGTGTACTGCAAAGATTTCGTATCCTACAGC
GAGATCACATTCCATCCGAAGCACTACCTGAACGTTCTGACCGGTCCCAA
TGGCAGTGGCAAGTCCACCATCGTGTCGGCCATAATTTTGGGCCTCGGAG
GGGAACCGATTCTCCTTGATCGCTCCGCCAGCGTTGCCGACTACATACAG
AGCAACAAAACCTCGGCCACCATAATTGTCCGGGTGTATGGACGCACGCC
CAACACCACGGAAACCTTTCGGCGCATAATAAACTCTAATGGCTTGTCTA
CCTTCTCTGTGAACGACAAAGACACCTCCAAGAAGAACTTTTTGGCTGCT
GTATCCTCCTTTAACATACAAGTCAGCAATTTGTGTCAGTTCCTCCCGCA
GGATCGGGTTCAGGACTTCTCCAAGATGAATCCTCAAGAGCTTTTGCTCA
ACACAATGTCCTCCGTGTGTGACGAAGACCTGATCAACAGCTTCAACAGT
CTAAAGCAAATGCGCACAGAACAGGCGAATGTCCATGCTAATCGGGAAAA
AGAGAAAAGTGATCTGGTTAAGAAGCAAAAACGATTGGAACACTTACAAA
TGACTGTGTCCCAATATAAAGAACGCGAAGAGGTCAAGCAAAAGCTGCAG
GTGTACAGTGCGAAGAAATTGTGGGTTGAGACTCAGGCTGGAGAAGCCAA
GGCCGCAGAAATGAAAACTCAAGTGAAAAACGCAAAAACTCAGAGCGACA
AATTGAAGAACCAACATGACAAACTTCTTCAATCCCAAGAACAAATTGAG
AAGGAAAAAGAATCACTCAGAAAGGCCTTATTGGAAAAGACACGCTTATT
AGAAAACGCTGTAGCGGAGAAGGCGGCTATTGATGGTAAAATGGACTCTT
TGAAGCAAGGAATTTACCAAAAAAAATATGAACTGGAGCAAAACATTAAA
AAATCACGAAGAACGGCCACAGAGTGTGATAACCTAAATCAGTTGGTGGA
GAATAAAATTTACGAGCTTGAAACCCTAAATAAGAGCAGGCCTCTGATCG
TTTCGGAACTTGAAAGGGCTAAGGAATCGTGCGCAGCTGCCCGCGGGAAA
GCAATGGAGCAGTACAGCAGACGGAGACAACTGGAACAAAAACTGAATGA
TGAAATGATTCCTGAAATTACTGCGTATAAACTTAAAATAGAGCGGTTGA
GAAACGTCAAAATGCAAAAGATTGATGAAATTAGAGCAAAAAATCCGAAT
TTGGTTGTGGCCATGAACTGGTTGGCGCAAAATAAGCAAAGGTACAAATT
GAACGTTTATGACCCAATGATACTTGAGCTTACAGTACAAAATCATGAGG
ACGCAAAGTTTTTGGAAAACGTTGTGGCGCAGCGCGATTTATTTGCATTT
GCGTGTGAGGACAAGGGGGATATGTCGGACCTGATCAACGAGTTGTGTGT
GAAGCAAAAATTGGGAGTTAACGTTATTTACTGCGCACCATCCGATAGAC
TCGTGTACAGTCCCAAAACTCCCATCGATGATCTGCGCTCTTTCGGATTT
CGGTCATACCTCGTGGATCTTGTCACGGGACCAATACCACTAATAAACAA
GCTGTGCGCTTCCTATTCCATTCATAATATACCAATTGGCACAGAAGCTG
TGGGCAATTACACTTCATCCATTCCAAAAGCTATCCGAGTTTATTTCGGC
GGCAGCAAGAAGTTCGTTGTGACCGCATCCCGCTATCGGTCGGATACTAT
TCTAACTGAAAGTAGCATTCGAGCGAAGAACCAACTTATTACAGTGGACT
CACAACAACTGGCCCTGGTGATGAAACAGTGCTCCGAAGCAGTGAAGGAA
AGCGACAGCATTAAAAACGCAATAACCCAGACCGACAATGAATTTGAACG
ATTGCAAGCTGTTGCAAAGGATGAGCAAGAGAAGAGACGAAAGCTTGACC
AAAAAATAGCCCATTTTAATAGCCTGAAAACCGAAATTGAAACGCTCCAA
AAGAAGCTGGAAGCCCTGCGCAATAGCGATTCGCTAGACTGTCTTGAAAC
CAATTTTTGTAACAGTTTGCATAAAGACTTAAAAAAAATATTCGATGCTG
ATGCGGAATTGTGCTCGTGCTTGAAAGCTATTGACCGACTTATAATTGAA
AAGAATATGGCCCAGACAAAGGTATCCATTTATATGCTGCAACATGAGAC
TCAAATTGAAGCCCTCAAGGAAAGCGAGGAACAGAGTAAAGCAGCAACCA
GAGACTTCCAACAGTTGCTGCAGTGCTTAGAAAATCAAATTAGCGACGTT
AACAAACGAAAGAGCGCTATTCAGGGCCTTTGCCACGGAGAAATTCCAAC
CAGTAGCAAATTTCCTTTTAAGAAGGAATTTAGGGAGCTGGAAAATATAG
ATTTGCCCGAACTACGAGAGGCAATACATGACTTTCAGGCACGATTGGAG
TGCATGAAAAGTGTAAACTCCGAGGCCATCAGCAGCTATCAAGGACTGCA
AAATGAAGTCAAGCAACTGGAGGAAGGAATTCAAGAGTCTGTTAACCAAG
CAAAGAGCATCGAGTCTGGCATGTCCAATTTATACGACAAATGGGAGCCC
AAACTTAATAGCTTGGTAGAAACAATCAGTACCAAGTTCAGCGAATTTAT
GGAGTCCATTGAATACGTGGGAGAAGTTGTGTTATCCAAAACCGACAAAT
ATGACTTTGACTCATATGGTATTCAGATAATGGTCCAGTTCAGGAGAGGT
CTCCAGCTGCAGCCGCTGGACAAGTTTATTCAATCTGGTGGCGAACGCGC
AGTGTCCATCGCCATATACTCATTGTCCTTGCAACATGTCACCCACGTGC
CATTCAGGTGTGTCGATGAAATAAATCAAGGCATGGACGCTACAAATGAA
CGTCACATATTCGACTTGCTCCTCAAAGAAGCCACCAAGCACGGCTCGGC
TCAGTATTTATTTGTAACACCTAAGTTGCTTCGAGACCTGAACTACAACG
AACATCTCTGTGTTTCCATTGTTCACAACTCAAAAACTGTTTGCCATGGC
ATGCAATTCCCGATGGCTTAGAAGCTTTCTAGACCAT
BS31848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC5-RE | 3105 | CG32438-PE | 1..3105 | 17..3121 | 15525 | 100 | Plus |
| SMC5-RG | 3078 | CG32438-PG | 1..2733 | 17..2749 | 13665 | 100 | Plus |
| SMC5-RF | 3006 | CG32438-PF | 872..3006 | 987..3121 | 10675 | 100 | Plus |
| SMC5-RG | 3078 | CG32438-PG | 2734..3078 | 2777..3121 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC5-RE | 3292 | CG32438-RE | 124..3233 | 13..3122 | 15550 | 100 | Plus |
| SMC5-RG | 3265 | CG32438-RG | 124..2860 | 13..2749 | 13685 | 100 | Plus |
| SMC5-RF | 3269 | CG32438-RF | 1075..3210 | 987..3122 | 10680 | 100 | Plus |
| SMC5-RG | 3265 | CG32438-RG | 2861..3206 | 2777..3122 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21569521..21569894 | 91..464 | 1870 | 100 | Plus |
| 3L | 28110227 | 3L | 21571731..21572061 | 1751..2081 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 21570718..21571008 | 987..1277 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 21570257..21570503 | 643..889 | 1235 | 100 | Plus |
| 3L | 28110227 | 3L | 21572684..21572910 | 2523..2749 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 21572391..21572616 | 2300..2525 | 1130 | 100 | Plus |
| 3L | 28110227 | 3L | 21572117..21572334 | 2082..2299 | 1090 | 100 | Plus |
| 3L | 28110227 | 3L | 21571220..21571430 | 1377..1587 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 21569952..21570135 | 459..642 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 21571489..21571654 | 1587..1752 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 21572976..21573136 | 2750..2910 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 21573188..21573307 | 2906..3025 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 21571062..21571163 | 1277..1378 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 21570554..21570654 | 888..988 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21573366..21573464 | 3024..3122 | 495 | 100 | Plus |
| 3L | 28110227 | 3L | 21569375..21569452 | 13..90 | 390 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 3428..3496 | 938..1003 | 120 | 69.6 | Plus |
BS31848.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:09:16 Download gff for
BS31848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smc5-RE | 171..3275 | 17..3121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:15 Download gff for
BS31848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smc5-RE | 128..3232 | 17..3121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:17 Download gff for
BS31848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC5-RE | 128..3232 | 17..3121 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:17 Download gff for
BS31848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21572117..21572334 | 2082..2299 | 100 | -> | Plus |
| 3L | 21572391..21572615 | 2300..2524 | 100 | -> | Plus |
| 3L | 21572686..21572910 | 2525..2749 | 100 | -> | Plus |
| 3L | 21572976..21573133 | 2750..2907 | 100 | -> | Plus |
| 3L | 21573190..21573307 | 2908..3025 | 100 | -> | Plus |
| 3L | 21573368..21573463 | 3026..3121 | 100 | | Plus |
| 3L | 21571732..21572061 | 1752..2081 | 100 | -> | Plus |
| 3L | 21569379..21569452 | 17..90 | 100 | -> | Plus |
| 3L | 21569521..21569893 | 91..463 | 100 | -> | Plus |
| 3L | 21569957..21570135 | 464..642 | 100 | -> | Plus |
| 3L | 21570257..21570503 | 643..889 | 100 | -> | Plus |
| 3L | 21570556..21570654 | 890..988 | 100 | -> | Plus |
| 3L | 21570720..21571007 | 989..1276 | 100 | -> | Plus |
| 3L | 21571062..21571163 | 1277..1378 | 100 | -> | Plus |
| 3L | 21571222..21571430 | 1379..1587 | 100 | -> | Plus |
| 3L | 21571490..21571653 | 1588..1751 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:15 Download gff for
BS31848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21564162..21564263 | 1277..1378 | 100 | -> | Plus |
| arm_3L | 21566468..21566563 | 3026..3121 | 100 | | Plus |
| arm_3L | 21563357..21563603 | 643..889 | 100 | -> | Plus |
| arm_3L | 21563656..21563754 | 890..988 | 100 | -> | Plus |
| arm_3L | 21563820..21564107 | 989..1276 | 100 | -> | Plus |
| arm_3L | 21562479..21562552 | 17..90 | 100 | -> | Plus |
| arm_3L | 21562621..21562993 | 91..463 | 100 | -> | Plus |
| arm_3L | 21563057..21563235 | 464..642 | 100 | -> | Plus |
| arm_3L | 21564322..21564530 | 1379..1587 | 100 | -> | Plus |
| arm_3L | 21564590..21564753 | 1588..1751 | 100 | -> | Plus |
| arm_3L | 21564832..21565161 | 1752..2081 | 100 | -> | Plus |
| arm_3L | 21565217..21565434 | 2082..2299 | 100 | -> | Plus |
| arm_3L | 21565491..21565715 | 2300..2524 | 100 | -> | Plus |
| arm_3L | 21565786..21566010 | 2525..2749 | 100 | -> | Plus |
| arm_3L | 21566076..21566233 | 2750..2907 | 100 | -> | Plus |
| arm_3L | 21566290..21566407 | 2908..3025 | 100 | -> | Plus |
BS31848.pep Sequence
Translation from 16 to 3120
> BS31848.pep
MAGDRALSSKQLAGRIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKS
TIVSAIILGLGGEPILLDRSASVADYIQSNKTSATIIVRVYGRTPNTTET
FRRIINSNGLSTFSVNDKDTSKKNFLAAVSSFNIQVSNLCQFLPQDRVQD
FSKMNPQELLLNTMSSVCDEDLINSFNSLKQMRTEQANVHANREKEKSDL
VKKQKRLEHLQMTVSQYKEREEVKQKLQVYSAKKLWVETQAGEAKAAEMK
TQVKNAKTQSDKLKNQHDKLLQSQEQIEKEKESLRKALLEKTRLLENAVA
EKAAIDGKMDSLKQGIYQKKYELEQNIKKSRRTATECDNLNQLVENKIYE
LETLNKSRPLIVSELERAKESCAAARGKAMEQYSRRRQLEQKLNDEMIPE
ITAYKLKIERLRNVKMQKIDEIRAKNPNLVVAMNWLAQNKQRYKLNVYDP
MILELTVQNHEDAKFLENVVAQRDLFAFACEDKGDMSDLINELCVKQKLG
VNVIYCAPSDRLVYSPKTPIDDLRSFGFRSYLVDLVTGPIPLINKLCASY
SIHNIPIGTEAVGNYTSSIPKAIRVYFGGSKKFVVTASRYRSDTILTESS
IRAKNQLITVDSQQLALVMKQCSEAVKESDSIKNAITQTDNEFERLQAVA
KDEQEKRRKLDQKIAHFNSLKTEIETLQKKLEALRNSDSLDCLETNFCNS
LHKDLKKIFDADAELCSCLKAIDRLIIEKNMAQTKVSIYMLQHETQIEAL
KESEEQSKAATRDFQQLLQCLENQISDVNKRKSAIQGLCHGEIPTSSKFP
FKKEFRELENIDLPELREAIHDFQARLECMKSVNSEAISSYQGLQNEVKQ
LEEGIQESVNQAKSIESGMSNLYDKWEPKLNSLVETISTKFSEFMESIEY
VGEVVLSKTDKYDFDSYGIQIMVQFRRGLQLQPLDKFIQSGGERAVSIAI
YSLSLQHVTHVPFRCVDEINQGMDATNERHIFDLLLKEATKHGSAQYLFV
TPKLLRDLNYNEHLCVSIVHNSKTVCHGMQFPMA*
BS31848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC5-PE | 1034 | CG32438-PE | 1..1034 | 1..1034 | 5234 | 100 | Plus |
| SMC5-PG | 1025 | CG32438-PG | 1..1025 | 1..1034 | 5163 | 99.1 | Plus |
| SMC5-PF | 1001 | CG32438-PF | 1..1001 | 1..1034 | 5028 | 96.8 | Plus |
| SMC5-PH | 992 | CG32438-PH | 1..992 | 1..1034 | 4957 | 95.9 | Plus |
| jnj-PA | 1122 | CG5524-PA | 97..1102 | 14..1003 | 270 | 19.9 | Plus |
