BS31860.complete Sequence
2591 bp assembled on 2012-10-01
GenBank Submission: KX804387
> BS31860.complete
GAAGTTATCAGTCGACATGCTACGGGCAATCGGGAAACGGGACAGGGACA
TCTTCGAGGAAGTTTGGCCGGACAAAAGGCGAATAGTTTTAAAGCTACTG
CGCCAGGACACGGTGTCGCAGCGCGAATGGCAGGACCTATTCTTCGGCGT
ACACTTCGTGTGCCTGTGGGACGAGAAGGGCGCGGCCAAGATCTACGACT
GCCTGCAGCAGGACATCGTTGAGTTTATCGTCCAGGCCCAAAGCCAGGTG
CAAGCGCAACGGGGCGAGCAGGCCCTTCTGGCCACCTATATTGTGGAGTG
GCGGAAGTTCTTTACACAGTCCAACTACCTGCCGCTGCCTTTCCGCCAGC
TGGAGCAGTCGCCCCAGGTGAAGCCCTCCTCCAGTGGCAGCAGCTCCTCC
GCATCCGTCTCCGCCTCGGGAGCGAGTACGAGTGCCGCCGCGGCGGCAGC
AGCTACTTCCTGCAGCGGCCAGGCTGGAAAGTCAGGAGCCTCCACCTCAG
CCGCAGCTGGAGCCTCCACTTCAGCCGCCGCTGCTGCAGCCTCCACATCC
GCCTCCACAAGCTCAGCAGCGGCAGCTGCAGCTGCTTCCGGAAGTGGGAG
CTCCAGCAGCAGCACCTCTACCTCCAAGAAAAACCCCACGGAGGACAGTC
CTGTACGAAAACTAATGCTGGACTCCTGGAACAAGCACATATTCCACGAC
ATCAAGCATCGTCTGCAGGAGTCGGCCATGAAGATTGTGCACGCCGAGCG
GAACGGCGATGCCTATGATGCCCAGCTAGTGGTAGGCGTGCGCGAGAGCT
ATGTGAATCTCTCCTCGAATGCAGAGGACAAACTAGAGATCTACAGGGAG
AACTTTGAGATGGCGTACCTTAAGGCCACTGTCGAGTTCTATCGCCTGAA
ATCCGCCGAACAACAGCAAGAGAACGGAGTGCTGGCCTATATGAAATACG
CCGACTCAAAGTTGCGTGAGGAGGAGGTTAGGGCCAAGCGGTATCTGGAG
CCCAGCAGCTTCAGTATACTTACTTACACGCTGGTTAATGTGCTCATAGT
GGACCACCTCAACTCAATCATCGCCGAGTGTCCGGCTTTGATCAGGGACT
ATGAAACGGAGCGATTGAATCTCATGTTCCGCCTGATGGATAGAGTGATG
CACGGCGTTGGCGTGGAGCCCATGATGGGTGACCTGCAGCGTCACATCAT
GTCCGCCGGACTGGCCGACATGCTGTCCGCTTCGGAGGTGATTACCCAGG
ATTCGGAAAAGTACGTTGAGCGGCTACTTGAGCTGTTCAACAAGTTCAGC
GACCTGGTACGCAACGCCTTCAACGACGATCCCCGCTTCCTCACTGCCCG
CGACATTGCTTTTAAGACGGTAGTCAACGACACCAGCGTGTTCAAGATGG
AGCTACCCACGAGTATCGCCAATCGGGGTGTAAAGTACACAGCGCCGGAG
AGCAAATGCCCGGAACTACTGGCCAACTATTGCGACATGCTGCTGCGGCG
AACGCCGCTCAGCAAACGCCTCACCAGCGAACAGATCGACGCCCGTCTGC
GCGATGTCCTCTTGGTCCTGAAGTACGTCAACAACAAGGACGTCTTTATG
CGCTATCACAAAGTTCATTTGACGAGGCGCTTGATTCTGGGGACCAGTGC
GGACAGCGAAAAGGAGGAGGACATAGTCGAGTGGCTGAGGGAGGTGGGCA
TGCCGGCGGACTACGTGAATCGGCTGGCGCGCATGTTCCAAGACATAAAG
GTCAGCGAAGACTTAAATACTCAATTCCGCACCTCGATAAGTCGGCACGA
TGCTATCAACATAAAAATACTCAACGCGGGTGCCTGGGCCCGCTGTTCGG
AGCGAGTCTCGGTCTCACTGCCCATCGAGCTCGAGGACTATATTCCTGAT
GTGGAGGAGTTTTACAAGAAGAAGCATTCCGGCCGTAAGCTGCAGTGGTA
CCATCACATGAGCAATGGCACTATCACCTTTGTGAATAACTTCGGGCGCT
ACGATCTGGATGTGACCACTTTCCAGATGGCCGTCTTGTTTGCCTGGAAT
CAGCGTCAGCATGACAAAATTTCCTACGAGAATCTCCGCCTGGCCACAGA
ACTACCAGATCCCGAACTGAGGCGAACGTTGTGGTCGCTGGTAGCGTTCC
CTAAGATAAAGAAACAGATCCTGCTCATGGAACCGGCGGCGATCAGTTCG
CCCAAGGACTTTGCCGAGAACACAATGTTCTATATTAATCAGGAATTTGC
TATTGTCAAGAATGGCAAATCCCAGCGTCGTGGAAAGCTGAATCTCATCG
GGCGACTGCAATTGAGCACGGAGCGCTCGCAGCAGGAGGACAATCAATCC
ATTGTGCAACTGCGTATTCTGCGCACACAAGAGGCCATTATCAAAATCAT
GAAAGTGCGCAAGCGGATGAACAACGCAGCGCTGCAGGGTGAACTCATCG
ACATATTGAAGAACATGTTCCTGCCGTCCAAGAAGATGATCAAGGAGCAG
CTGGAGTGGCTGATTGAGAACAAGTATATGAGACGGGACGACGATGATAT
CAACATGTTCATTTACGTGGCCTAAAAGCTTTCTAGACCAT
BS31860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul5-RA | 2559 | CG1401-PA | 1..2559 | 17..2575 | 12795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul5-RA | 3325 | CG1401-RA | 86..2644 | 17..2575 | 12795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29061202..29062806 | 1629..25 | 8025 | 100 | Minus |
| 3R | 32079331 | 3R | 29060601..29060964 | 2108..1745 | 1805 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29060358..29060542 | 2291..2107 | 910 | 99.5 | Minus |
| 3R | 32079331 | 3R | 29060153..29060305 | 2438..2286 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 29059953..29060093 | 2575..2435 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 29061017..29061140 | 1752..1629 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:27:56 has no hits.
BS31860.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 12:12:50 Download gff for
BS31860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-5-RA | 270..2826 | 17..2573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:13 Download gff for
BS31860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-5-RA | 86..2642 | 17..2573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:49 Download gff for
BS31860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul5-RA | 86..2642 | 17..2573 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:49 Download gff for
BS31860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29059955..29060090 | 2438..2573 | 100 | <- | Minus |
| 3R | 29060154..29060303 | 2288..2437 | 100 | <- | Minus |
| 3R | 29060362..29060540 | 2109..2287 | 100 | <- | Minus |
| 3R | 29060601..29060958 | 1751..2108 | 100 | <- | Minus |
| 3R | 29061019..29061139 | 1630..1750 | 100 | <- | Minus |
| 3R | 29061202..29062812 | 17..1629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:13 Download gff for
BS31860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24885677..24885812 | 2438..2573 | 100 | <- | Minus |
| arm_3R | 24885876..24886025 | 2288..2437 | 100 | <- | Minus |
| arm_3R | 24886084..24886262 | 2109..2287 | 100 | <- | Minus |
| arm_3R | 24886323..24886680 | 1751..2108 | 100 | <- | Minus |
| arm_3R | 24886741..24886861 | 1630..1750 | 100 | <- | Minus |
| arm_3R | 24886924..24888534 | 17..1629 | 99 | | Minus |
BS31860.pep Sequence
Translation from 16 to 2574
> BS31860.pep
MLRAIGKRDRDIFEEVWPDKRRIVLKLLRQDTVSQREWQDLFFGVHFVCL
WDEKGAAKIYDCLQQDIVEFIVQAQSQVQAQRGEQALLATYIVEWRKFFT
QSNYLPLPFRQLEQSPQVKPSSSGSSSSASVSASGASTSAAAAAAATSCS
GQAGKSGASTSAAAGASTSAAAAAASTSASTSSAAAAAAASGSGSSSSST
STSKKNPTEDSPVRKLMLDSWNKHIFHDIKHRLQESAMKIVHAERNGDAY
DAQLVVGVRESYVNLSSNAEDKLEIYRENFEMAYLKATVEFYRLKSAEQQ
QENGVLAYMKYADSKLREEEVRAKRYLEPSSFSILTYTLVNVLIVDHLNS
IIAECPALIRDYETERLNLMFRLMDRVMHGVGVEPMMGDLQRHIMSAGLA
DMLSASEVITQDSEKYVERLLELFNKFSDLVRNAFNDDPRFLTARDIAFK
TVVNDTSVFKMELPTSIANRGVKYTAPESKCPELLANYCDMLLRRTPLSK
RLTSEQIDARLRDVLLVLKYVNNKDVFMRYHKVHLTRRLILGTSADSEKE
EDIVEWLREVGMPADYVNRLARMFQDIKVSEDLNTQFRTSISRHDAINIK
ILNAGAWARCSERVSVSLPIELEDYIPDVEEFYKKKHSGRKLQWYHHMSN
GTITFVNNFGRYDLDVTTFQMAVLFAWNQRQHDKISYENLRLATELPDPE
LRRTLWSLVAFPKIKKQILLMEPAAISSPKDFAENTMFYINQEFAIVKNG
KSQRRGKLNLIGRLQLSTERSQQEDNQSIVQLRILRTQEAIIKIMKVRKR
MNNAALQGELIDILKNMFLPSKKMIKEQLEWLIENKYMRRDDDDINMFIY
VA*
BS31860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul5-PA | 852 | CG1401-PA | 1..852 | 1..852 | 4310 | 100 | Plus |
| Cul1-PD | 774 | CG1877-PD | 150..774 | 213..852 | 688 | 30.7 | Plus |
| Cul1-PA | 774 | CG1877-PA | 150..774 | 213..852 | 688 | 30.7 | Plus |
| Cul1-PB | 774 | CG1877-PB | 150..774 | 213..852 | 688 | 30.7 | Plus |
| Cul1-PC | 774 | CG1877-PC | 150..774 | 213..852 | 688 | 30.7 | Plus |
