BS31861.complete Sequence
2027 bp assembled on 2012-09-26
GenBank Submission: KX802428
> BS31861.complete
GAAGTTATCAGTCGACATGCCGCAAACGAGTCCCAATTGGAGGCAGGCGG
ACAATGAGCGCACAAAAGGCGCTGTAAGTGTCATTGCAGCCAGGAACTGG
GCCACTGGGACTGCCACGCAGGACTGGAGCCAGAAGAGCAGCAGTAGCTG
GAGCAGCACCAGTCGAAGAACCGGAATCAGCAGAACCAGGACCAGGCCAG
CCACGTTGACAACCGAGATGACAGTGGCAGGACGAGCAGAACGAGCAGGA
GTAGGAGCGCCGTGGTGTCGCCGATTTTTCCATACATCCCCACTAGCGTC
TTGGCTACGCATCAGCTTCGTCCTTTTGGTCCTTCCAGCTCTCGGCTTTG
GGATACAAGTAGTCACCTGCAGCAATCCGGAACTAGGAGCAAGTGCTCCA
GATCCAGTGGATTTAACATGGGGAGGGAAAAACACTGAGGGACAGCTTAC
GACGGCCACAAGATCCACTCTGCCAGATAGTCCAATGACAACACAAAACG
ATCTAATTACGACAGCCAGCAACTTAGCGACAGCAAAAAAGCCAGCCACA
GCAGCCTCAGAGGCAGTAGTAGATACGGCAGAAACAGCAGAAACAGCACC
ACCGACTGAGGCAACCAGCTCATGGAGCTCCACGGCCGTAGCCCGGGGCA
TGTCATCAGCAGATGGAGCAGGGGAGGCGATAGCAACCAGCCAGTCAGCA
CAAATTGGGCTAACTACTCAGGCCACAGTACGGCAAACAGAAGCGCAGAC
AGCATCAACAGCGACACAAGCCGCAGCAGCAACATCAGCAGCAACATCAG
CGGCAATAGCATCAGCAGCAGCAGCAACAGAGACCGCAGCAGAGATGCTC
ATATCAACAATTTATCCAGCATCAACGGAAACGGATTTGCACAACTCCAT
TGAGCGAGTAGAGGGGCAACGTGGAAAGATGGCGAACGCGTTTCATCCGG
GTGTCCCTGATTCATTGACCAAGGGCTTCTCCATTCCGACCTTCCTGCCT
CCATTTCCCGTTTTCGCGGCTGCGGATTTGCCAGCTTACCGCGCCGCTGC
TGATGCAGCCGAGGCGGCCAAGTTGGCGGCAGAGGCGGCGGCCCAGGCAG
CGGCCGCCAAAACATCCTCGGAAGCGGTGACAATGTCGCCGGAGGAGCAG
CGCCGTCAAATGTTTAATGAGCAGCACTCCTACCTGGCCGCCCACCGCGA
TGGTGGCGATGGGGCGGGGTCGGCGGTGCGGCGCAACCTGACAATGCCCG
TGCTAAACATCACCGCTCAGATGGGAAACCACGCCTACATGCCGTGCCAG
ATACATCGATTGTCGGATAAACCCGTTTCATGGGTGCGCATGCGCGATAA
CCACATTATCAGCGTGGACGAAACGACCTTTATAGCGGATGAGCGATTCC
AATCGATATATCAGGAGGATCACGACTACACCTGGTCCCTGCAAATCAAG
TACGTGGAGCCAAGCGATGCCGGATGGTACGAGTGTCAGATGGCAACAGA
GCCAAAGCTGAGTGCCAAAGTTCACCTGCAGATAGTCAAACCCAAGACTG
AGCTGATTGGTGATCAGAGCCGCTTCGTGAAGGCGGGCAGCAAGGTGGCG
CTGCACTGCATCGTACGGGGCACCCTGGATCCGCCCAAGTACATAATCTG
GTTCCGGGGCCAGAAGAAGATTAGCGATAGTGACGAGCGAACTGGTTGGT
ATACGCAGCTAGATCGGAATATATTTGGAACCGTGGGCGATAATCAAAAC
ACGATCGGCTCATTAATTATACCGCTCGTGCGAAAGGAGGATTCCGGCAA
TTATACGTGCCAGCCATCGAACAGCGTCTCCGTGTCCGTGGACCTGCACG
TGCTAAGCGGTGAATATTCCGCATCGGCCATCATGTCAACGGCGGCAAGG
ACGACGAAAGGCGGGAGGAGCACGTGCCACTCGACGCTGGGACTCCTGGG
AATCCTTGGACTCCTATGGGCGATGCAGGGAGCGATGCACACACCGCCGA
CCCAGACGTGAAAGCTTTCTAGACCAT
BS31861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr17-RD | 1995 | CG31361-PD | 1..1995 | 17..2011 | 9975 | 100 | Plus |
| dpr17-RA | 1995 | CG31361-PA | 1..1995 | 17..2011 | 9975 | 100 | Plus |
| dpr17-RE | 1527 | CG31361-PE | 1..1527 | 485..2011 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr17-RD | 3479 | CG31361-RD | 1048..3042 | 17..2011 | 9975 | 100 | Plus |
| dpr17-RA | 3485 | CG31361-RA | 1054..3048 | 17..2011 | 9975 | 100 | Plus |
| dpr17-RE | 2663 | CG31361-RE | 572..2226 | 357..2011 | 8275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12107139..12108082 | 357..1300 | 4720 | 100 | Plus |
| 3R | 32079331 | 3R | 12096677..12097016 | 17..356 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 12109931..12110171 | 1298..1538 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 12110291..12110505 | 1539..1753 | 1075 | 100 | Plus |
| 3R | 32079331 | 3R | 12110831..12110983 | 1859..2011 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 12110581..12110689 | 1753..1861 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 5166895..5166984 | 1571..1660 | 255 | 85.6 | Plus |
Blast to na_te.dros performed 2014-11-28 12:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2985 | 489..717 | 163 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6928 | 62..245 | 142 | 58.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3352 | 490..643 | 137 | 60.7 | Plus |
BS31861.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:09:15 Download gff for
BS31861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr17-RA | 1052..3045 | 17..2010 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:12 Download gff for
BS31861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr17-RA | 1054..3047 | 17..2010 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:08 Download gff for
BS31861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr17-RA | 1054..3047 | 17..2010 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:08 Download gff for
BS31861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12107139..12108082 | 357..1300 | 100 | -> | Plus |
| 3R | 12109934..12110171 | 1301..1538 | 100 | -> | Plus |
| 3R | 12110291..12110505 | 1539..1753 | 100 | -> | Plus |
| 3R | 12110582..12110687 | 1754..1859 | 100 | -> | Plus |
| 3R | 12110832..12110982 | 1860..2010 | 100 | | Plus |
| 3R | 12096677..12097016 | 17..356 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:12 Download gff for
BS31861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7936304..7936409 | 1754..1859 | 100 | -> | Plus |
| arm_3R | 7936554..7936704 | 1860..2010 | 100 | | Plus |
| arm_3R | 7922399..7922738 | 17..356 | 100 | -> | Plus |
| arm_3R | 7932861..7933804 | 357..1300 | 100 | -> | Plus |
| arm_3R | 7935656..7935893 | 1301..1538 | 100 | -> | Plus |
| arm_3R | 7936013..7936227 | 1539..1753 | 100 | -> | Plus |
BS31861.pep Sequence
Translation from 16 to 2010
> BS31861.pep
MPQTSPNWRQADNERTKGAVSVIAARNWATGTATQDWSQKSSSSWSSTSR
RTGISRTRTRPATLTTEMTVAGRAERAGVGAPWCRRFFHTSPLASWLRIS
FVLLVLPALGFGIQVVTCSNPELGASAPDPVDLTWGGKNTEGQLTTATRS
TLPDSPMTTQNDLITTASNLATAKKPATAASEAVVDTAETAETAPPTEAT
SSWSSTAVARGMSSADGAGEAIATSQSAQIGLTTQATVRQTEAQTASTAT
QAAAATSAATSAAIASAAAATETAAEMLISTIYPASTETDLHNSIERVEG
QRGKMANAFHPGVPDSLTKGFSIPTFLPPFPVFAAADLPAYRAAADAAEA
AKLAAEAAAQAAAAKTSSEAVTMSPEEQRRQMFNEQHSYLAAHRDGGDGA
GSAVRRNLTMPVLNITAQMGNHAYMPCQIHRLSDKPVSWVRMRDNHIISV
DETTFIADERFQSIYQEDHDYTWSLQIKYVEPSDAGWYECQMATEPKLSA
KVHLQIVKPKTELIGDQSRFVKAGSKVALHCIVRGTLDPPKYIIWFRGQK
KISDSDERTGWYTQLDRNIFGTVGDNQNTIGSLIIPLVRKEDSGNYTCQP
SNSVSVSVDLHVLSGEYSASAIMSTAARTTKGGRSTCHSTLGLLGILGLL
WAMQGAMHTPPTQT*
BS31861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr17-PD | 664 | CG31361-PD | 1..664 | 1..664 | 3407 | 100 | Plus |
| dpr17-PA | 664 | CG31361-PA | 1..664 | 1..664 | 3407 | 100 | Plus |
| dpr17-PE | 508 | CG31361-PE | 1..508 | 157..664 | 2584 | 100 | Plus |
| dpr17-PC | 508 | CG31361-PC | 1..508 | 157..664 | 2584 | 100 | Plus |
| dpr17-PB | 508 | CG31361-PB | 1..508 | 157..664 | 2584 | 100 | Plus |
