BS31862.complete Sequence
3215 bp assembled on 2012-10-05
GenBank Submission: KX800534
> BS31862.complete
GAAGTTATCAGTCGACATGGAGGAGGACGTGCTGAACGCCCTGCAGACGC
GGAGTGCCTACTTATCCGGCGGATTCGATCGCCAGAAGCGCATCGTCTTC
GTTGTCAACGCATTCAACGATCTGCAGCTGTGGAATCGCCGCTATCTGCA
GGTGACTCTGGACTATCTGAAGCGGTCTCTCAGCGCTTCGGTGTTGCAGA
ATGGCGTGAGTGTGGTGGTCAATGCCCAGGAGAGCAGTTCGCGGATATCA
CGGCAGCAGGTGCGACAGATTTACGCCCTCTTCGGGGGCGACATCAATGT
GGATCTGTATCTAGTCAGGGCGGAGGGCTTCTGGGAGAAGCATGTGGAGC
CGTGCACCAAGTCCCAGGTCAAGGGAGAGCCCCTGGTGCTGTCGAAGGCG
AGGCTGTTCAAGTTCATAGAGCCGCAGAACCTGCCCGAGGAACTGGGCGG
CACCTTGCAGTTCAACTACGATCTGTGGCTGCAGCAGCGCAAGTCCATCG
ACGAGTTCACCAAGTCGCATGTGCAGACTTTGGCTTCGATGGAGAAACTG
TTGGCTCTTCTGCGGGAGCACAAGTCTCTGCGGCCGGCGGAAGCGGATGT
GGAGCTGAAGAAGTGCGCCCAGATGCATGCCGGTGTGCAAAACGACATAG
AGACCGCCATCGACTTGGGTAACGCGATCTTGGCCCGCTTCAACGAGGTC
TACGAGACGCATTCACCGCCGCCACAAGCGGTCGCACCTGCCTCGGAGTC
CCCTGCGGGTCCCCCGCCCATCGCTGCCCACTCCGCCAGTGCAGGTTCCC
CCCAGAAGCCCCTCCTGCCACCCGATCTCGCCTGTGAACGCACCCGCATC
GAGTTGCGATTGAATGAGATCGAAAAGAAGCAGACGGCCATCCGGACTGC
ATGGCTGGAACTGCTCCGATCTCTGAGGGAGGCACGCGAACTCAGCACTT
TGGAGGATGGAGTGTCCTTCGTCACCAATTGGATCCTGCAGGAGGCCGAG
CTGTTACTCAGTCGCCAAAGGAGCGTTGCAGGTGATGTTAGGGGATGTGA
GGCACTACGTTCTGCTCACGACCAACTGGAACTGGAGTGCCGGGAAACCT
ACGGTTGCTATGCGGAGTTGCTCTACAAGATCGAAAAGTTTGCCGCTGAA
AGGCAGGCATCTTCAAAGGACATGGACCGATGCCAGGATCTTCTTTCGCA
GCGAGACTTCATGCAGTTTGTGTGTCGCTCCTTTGCAAAGCGATTGGAGC
GACGAAGAAATGTACTGATGACCGCCCTGAGGTTCCATCGCCTCCTCGAT
CAATTTGAGGATTTACTGGCCACCGGTAACCATGTGGTGGAGGTGGACAG
TCGATCGCTTGACTGGCCCGAGGCAGAGCAGTTACTCATGCAGCTCAATA
AAAACCAGGAAATGTTGGGCCACGTCGAGCGCGAACTTGTGCGTGAAGGT
GAAAAGCTGAGCGACATGCTGGCCATGCCAGTGAAAGACGCTCTGGGCCG
TGACCTCCAGCTGGACTACAGTGCCGAGATCGCCCAGCTGCGCCGGCAGA
TCGACGAGAGCCGGCGTCGTCGTCAGGTGTGCGGACATCGGCTAGCGCTG
CAGCGGCTCACCTTGGAGCAGGTGACCCACATCCACGCCTACGAGGAGGA
CGCGCGGAGGGCGCGGGACTGGCTGCAGGAGTTGTATGCCGTCTTGCTGC
GCTGCCACTCCCATGTCGGCTGCAACATCCACGAGATTCAGCTGCAGAAG
GATGAGCTGCAGGGGTTCGAGGAAACCGGACGGAGCATCTACCACTATGG
CTGCCAATTGCTGGAGGCTTCCCAAACGCTGCGCCTCTGCTGCAAACTGG
AACCATCATCATTTAGGTCACAAAGCAATTCCAGTCAGGGTTTCATTAGT
GACGAACTGCAGCACACGTGGCACAGCCTACAGTCTGTGGCCCAGGAGCA
AATGACCAGACTGCGCGTCTCCGCCGTTTTCCACCGCAGTGTGGAGGCCT
ATTACCGCCAGTTGAGGGAACTTCGACCCCTTTTGACCAAGGAACTGTCC
GCCCAACTACAGCAGCAGCAAAGACAGCAGCACAACCGCAGCAGCAGTGG
AATAGGTAGCGATGCCGAGGCAGAATTGGAATCGGAGCTGTCTCCATTGG
GGGAGATGCCTCCGCGACTACAGAGGCACTTGGTGGCCAGGGAGCAACTG
CTCGTCGAAGTGGGCAGAATGGTCAGACTGGGAAGATTGCTGAAGAAGCG
TCTCAAAGAGCCCTTCGTTCTGGACGCATTAACAGGAAAGAGTGTCGTGG
CCGATGAACTACCCCTGGATTGCACTGCACCAAGTCCACTCCATGACAGT
GGAAGGACCAGCAGTGCTGGAAGCGAGATACCCGTGGAAACCCTGCCAGC
TACTGTGCAAGTGGTGCCCACAGGCAGCAACGAACTGGCCTGCGCCGCCA
TTTCCCACAAGCTGGGAGCCATTGCCGAGGTAGCCGAGTCCCTGGACGCA
GTCATCCGGGATGTCCAGCAGCAGGAGGGCGTTGTTAGCAATGGAATCAG
CAATGTCACTGGAGGACATGGCATAAAAAAATTGGGAAGCATTGAGGATT
GGCAATCGCGCTCCACCGAGGACGAATCCTTCGCCACTGCCTCCGAAGGC
AACTTTACGCCGAACTCGCATTCCTCATCCTTTCAAACAGCCTCAGGACG
CACTAGCTCCTACATAGGATCGGCCAAGAACTCCTTCGATGAGGCGGACG
ACTCAACTTTAAGCACATTCGAAATACCCGAACTACCACCTTCGCCAGTC
AATATGTCCTTTGATAGCTCCGAAATGAGCTACTTCTCCGACCGTCAGCA
GAGGATGAAAAGTGAAGATCAGGACAGTGTGGCGGGCATGGCAGAGCTGC
ATAGTCAGAGTGTAACGCCCACTCCGGACGAGGAGCAGCAACACCTGCTT
CTGCCACTACCATTGCCGCAGGCCATCGAATCGGACAGCGAGGTGGAAGG
ATTCAATTTGGCCACTGGCATTACGACGGAGCTGGCGCCCAGGATGTCCA
ACGCCCACACGCCGGAGGTGAGCTACACATCGGCCAATAACACCGCTCCG
GCTTCAACTAACCCCAACGAATCGAAACCGCCGCCTTCTTGGCGACGCAG
CAAATACTACGAGAACATAACGAAACAGACGATCAAGGGATTTCTCTGAA
AGCTTTCTAGACCAT
BS31862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15822-RF | 3183 | CG15822-PF | 1..3183 | 17..3199 | 15915 | 100 | Plus |
| CG15822-RE | 3183 | CG15822-PE | 1..3183 | 17..3199 | 15915 | 100 | Plus |
| CG15822-RD | 3183 | CG15822-PD | 1..3183 | 17..3199 | 15915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15822-RF | 4043 | CG15822-RF | 257..3439 | 17..3199 | 15915 | 100 | Plus |
| CG15822-RE | 3996 | CG15822-RE | 210..3392 | 17..3199 | 15915 | 100 | Plus |
| CG15822-RD | 4092 | CG15822-RD | 306..3488 | 17..3199 | 15915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2158246..2158997 | 1419..668 | 3760 | 100 | Minus |
| 3L | 28110227 | 3L | 2153805..2154409 | 3199..2595 | 3025 | 100 | Minus |
| 3L | 28110227 | 3L | 2156634..2157143 | 2292..1783 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 2157374..2157739 | 1783..1418 | 1830 | 100 | Minus |
| 3L | 28110227 | 3L | 2154478..2154784 | 2597..2291 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 2160623..2160826 | 379..176 | 1005 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2160103..2160281 | 670..492 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 2161631..2161797 | 183..17 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 2160337..2160452 | 493..378 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:34:59 has no hits.
BS31862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-05 11:23:56 Download gff for
BS31862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15822-RD | 303..3484 | 17..3198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:26 Download gff for
BS31862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15822-RD | 306..3487 | 17..3198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:18 Download gff for
BS31862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15822-RD | 306..3487 | 17..3198 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:18 Download gff for
BS31862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2153806..2154407 | 2597..3198 | 100 | <- | Minus |
| 3L | 2154479..2154782 | 2293..2596 | 100 | <- | Minus |
| 3L | 2156634..2157142 | 1784..2292 | 100 | <- | Minus |
| 3L | 2157374..2157738 | 1419..1783 | 100 | <- | Minus |
| 3L | 2158247..2158996 | 669..1418 | 100 | <- | Minus |
| 3L | 2160105..2160279 | 494..668 | 100 | <- | Minus |
| 3L | 2160337..2160450 | 380..493 | 100 | <- | Minus |
| 3L | 2160623..2160818 | 184..379 | 100 | <- | Minus |
| 3L | 2161631..2161797 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:26 Download gff for
BS31862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2160105..2160279 | 494..668 | 100 | <- | Minus |
| arm_3L | 2160337..2160450 | 380..493 | 100 | <- | Minus |
| arm_3L | 2160623..2160818 | 184..379 | 100 | <- | Minus |
| arm_3L | 2161631..2161797 | 17..183 | 100 | | Minus |
| arm_3L | 2153806..2154407 | 2597..3198 | 100 | <- | Minus |
| arm_3L | 2154479..2154782 | 2293..2596 | 100 | <- | Minus |
| arm_3L | 2156634..2157142 | 1784..2292 | 100 | <- | Minus |
| arm_3L | 2157374..2157738 | 1419..1783 | 100 | <- | Minus |
| arm_3L | 2158247..2158996 | 669..1418 | 100 | <- | Minus |
BS31862.pep Sequence
Translation from 16 to 3198
> BS31862.pep
MEEDVLNALQTRSAYLSGGFDRQKRIVFVVNAFNDLQLWNRRYLQVTLDY
LKRSLSASVLQNGVSVVVNAQESSSRISRQQVRQIYALFGGDINVDLYLV
RAEGFWEKHVEPCTKSQVKGEPLVLSKARLFKFIEPQNLPEELGGTLQFN
YDLWLQQRKSIDEFTKSHVQTLASMEKLLALLREHKSLRPAEADVELKKC
AQMHAGVQNDIETAIDLGNAILARFNEVYETHSPPPQAVAPASESPAGPP
PIAAHSASAGSPQKPLLPPDLACERTRIELRLNEIEKKQTAIRTAWLELL
RSLREARELSTLEDGVSFVTNWILQEAELLLSRQRSVAGDVRGCEALRSA
HDQLELECRETYGCYAELLYKIEKFAAERQASSKDMDRCQDLLSQRDFMQ
FVCRSFAKRLERRRNVLMTALRFHRLLDQFEDLLATGNHVVEVDSRSLDW
PEAEQLLMQLNKNQEMLGHVERELVREGEKLSDMLAMPVKDALGRDLQLD
YSAEIAQLRRQIDESRRRRQVCGHRLALQRLTLEQVTHIHAYEEDARRAR
DWLQELYAVLLRCHSHVGCNIHEIQLQKDELQGFEETGRSIYHYGCQLLE
ASQTLRLCCKLEPSSFRSQSNSSQGFISDELQHTWHSLQSVAQEQMTRLR
VSAVFHRSVEAYYRQLRELRPLLTKELSAQLQQQQRQQHNRSSSGIGSDA
EAELESELSPLGEMPPRLQRHLVAREQLLVEVGRMVRLGRLLKKRLKEPF
VLDALTGKSVVADELPLDCTAPSPLHDSGRTSSAGSEIPVETLPATVQVV
PTGSNELACAAISHKLGAIAEVAESLDAVIRDVQQQEGVVSNGISNVTGG
HGIKKLGSIEDWQSRSTEDESFATASEGNFTPNSHSSSFQTASGRTSSYI
GSAKNSFDEADDSTLSTFEIPELPPSPVNMSFDSSEMSYFSDRQQRMKSE
DQDSVAGMAELHSQSVTPTPDEEQQHLLLPLPLPQAIESDSEVEGFNLAT
GITTELAPRMSNAHTPEVSYTSANNTAPASTNPNESKPPPSWRRSKYYEN
ITKQTIKGFL*
BS31862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15822-PF | 1060 | CG15822-PF | 1..1060 | 1..1060 | 5403 | 100 | Plus |
| CG15822-PE | 1060 | CG15822-PE | 1..1060 | 1..1060 | 5403 | 100 | Plus |
| CG15822-PD | 1060 | CG15822-PD | 1..1060 | 1..1060 | 5403 | 100 | Plus |
| CG15822-PG | 1267 | CG15822-PG | 1..758 | 1..758 | 3860 | 100 | Plus |
| CG15822-PG | 1267 | CG15822-PG | 966..1267 | 759..1060 | 1543 | 100 | Plus |
