BS31884.complete Sequence
1733 bp assembled on 2012-09-26
GenBank Submission: KX801361
> BS31884.complete
GAAGTTATCAGTCGACATGGATTTGCGCGTGAGCTTTAGTGACAAGCTGA
AACTGGGCGCCAAGATTATTGGCCATAAGGTGGTTCAGTACAAGCTGGGC
ACGGGTCAGACCAAGGAGCTGGCCACCAAATATGGCCAGCTGAAGGGTCA
GCAGCGCAGGACACTCTACGATGGCGAACCCTACTACTCCTTCGAGGGCA
TTCCCTTTGCCCAGCCGCCCGTGGGTGAGCTGCGTTTTCGCGCACCCCAA
CCACCGAGCTCGTGGCAGGGCGTCAGGGATTGCACCTATGCCAGGGAGAA
GCCTATGCAGAGGAACTCCATTACTAACGCTGCCGAAGGATCCGAGGATT
GCCTCTACCTCAATGTCTACGCCAAGAGGCTCGAGTCCCCGAAACCACTG
CCCGTAATGGTCTGGATATTCGGTGGGGGCTTTCAGGTAGGCGGTGCATC
GCGGGAACTCTATGGACCGGATTACTTTATGAAGCACGATATCCTGCTGG
TCACCATCAACTATCGGGTGGGTGTCCTGGGCTTCCTAAGTCTCAAGGAC
AAGGAGCTCAAGATACCTGGAAATGCGGGACTGAAGGACCAAATCCAAGC
ACTGCGTTGGGTCAAGGAGAACATAGCCAGTTTCAATGGCGATCCTGAGA
GCATAACCGTATTCGGCGAATCAGCTGGCGGAGCATCCACGCACATCCTC
ATGCAAACGGAGCAGGCCAGAGGACTCTTCCACCGCGCCATCGTTCAATC
TGGTTCAGCTTTGTGCGCCTGGGCGACGCAACCGGATCGAAAGTGGCCAC
AGAGATTGGGTAAGGAACTGGGCTATGCCGGCAATTTGGAGAGCGAGAAG
GAACTGTTGGAGTTCTTCCAGCAAATTCCGGCCAGCAAGTTGGCCCAGTA
CTGCAATTCAATCGTAACGCAGGAGGAGCAGCGCGACTACGAGATCTTGG
CCTTTGCCCCGGTTATCGAGCCATATGTTGGCGATGATTGCGTGATCCCA
AAATCGCAGCAAGAGCAGCTGTCCAGCGCCTGGGGTAATTCCATTCCCAT
GATCATAGGCGGAACTTCGTTCGAAGGACTCTTCTCTTATCGCACCACCC
TGGATGATCCGCTTTACATGCTGAGTGCCTTCGAGGCCATAATTCCCAAA
CAGGTTCGCGATGCCATCGACAAGGAGGAGCTGGCGGAGATGGTGAGGAG
GCTGAAGAAGTCCTACTTTGACGATCCCGACCGGGCCAGCATGGAGCTCT
ACGAGTGCCTTCACATTCTGAGCATCAAGAACTTCTGGCACGATATCCAT
CGCACCTTGCTCGCTCGCCTGGCCTATGCCACCAACTTGCCCACGTATCT
CTATCGATTCGATATGGATTCGCCACACTTTAATCACTATCGCATCTTGA
AGTGCGGCAAAAAGGTGAGGGGTGTGTGCCATGCGGATGACATTTCCTAC
ATGTTCTACGGCATACTCTCCAGTAAACTGGACAAGAATTCGCCCGAATA
CCGCACCATCGAGCGACTGGTGGGCATGTGGACATCTTTCGCCACCACCG
GAGATCCCAACTGTGAGATAATCGCTCCCGTCAAGTGGGATCCACTGCGT
CCGGGTGGCGTGGAAAACTGCCTTAACATTGCCGATGGCCTGGAGTTCAT
TCCGCTGCCGGAGAGCAAACAATTTGTGGTCTGGGATAGTTTTTACACCA
GGGAAAGCCTCTACTAAAAGCTTTCTAGACCAT
BS31884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6018-RA | 1701 | CG6018-PA | 1..1701 | 17..1717 | 8505 | 100 | Plus |
| alpha-Est1-RA | 1698 | CG1031-PA | 30..293 | 46..309 | 255 | 73.1 | Plus |
| alpha-Est9-RD | 1764 | CG1128-PD | 311..435 | 333..457 | 205 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6018-RA | 1955 | CG6018-RA | 115..1815 | 17..1717 | 8505 | 100 | Plus |
| alpha-Est1-RA | 2123 | CG1031-RA | 216..479 | 46..309 | 255 | 73.1 | Plus |
| alpha-Est9-RD | 3455 | CG1128-RD | 852..976 | 333..457 | 205 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22550320..22551973 | 64..1717 | 8270 | 100 | Plus |
| 2R | 25286936 | 2R | 22550208..22550255 | 17..64 | 240 | 100 | Plus |
| 3R | 32079331 | 3R | 7547991..7548142 | 309..158 | 220 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:16:52 has no hits.
BS31884.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 11:03:47 Download gff for
BS31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6018-RA | 109..1807 | 17..1715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:08 Download gff for
BS31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6018-RA | 115..1813 | 17..1715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:03 Download gff for
BS31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6018-RA | 115..1813 | 17..1715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:03 Download gff for
BS31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22550208..22550254 | 17..63 | 100 | -> | Plus |
| 2R | 22550320..22551971 | 64..1715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:08 Download gff for
BS31884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18437713..18437759 | 17..63 | 100 | -> | Plus |
| arm_2R | 18437825..18439476 | 64..1715 | 100 | | Plus |
BS31884.pep Sequence
Translation from 16 to 1716
> BS31884.pep
MDLRVSFSDKLKLGAKIIGHKVVQYKLGTGQTKELATKYGQLKGQQRRTL
YDGEPYYSFEGIPFAQPPVGELRFRAPQPPSSWQGVRDCTYAREKPMQRN
SITNAAEGSEDCLYLNVYAKRLESPKPLPVMVWIFGGGFQVGGASRELYG
PDYFMKHDILLVTINYRVGVLGFLSLKDKELKIPGNAGLKDQIQALRWVK
ENIASFNGDPESITVFGESAGGASTHILMQTEQARGLFHRAIVQSGSALC
AWATQPDRKWPQRLGKELGYAGNLESEKELLEFFQQIPASKLAQYCNSIV
TQEEQRDYEILAFAPVIEPYVGDDCVIPKSQQEQLSSAWGNSIPMIIGGT
SFEGLFSYRTTLDDPLYMLSAFEAIIPKQVRDAIDKEELAEMVRRLKKSY
FDDPDRASMELYECLHILSIKNFWHDIHRTLLARLAYATNLPTYLYRFDM
DSPHFNHYRILKCGKKVRGVCHADDISYMFYGILSSKLDKNSPEYRTIER
LVGMWTSFATTGDPNCEIIAPVKWDPLRPGGVENCLNIADGLEFIPLPES
KQFVVWDSFYTRESLY*
BS31884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6018-PA | 566 | CG6018-PA | 1..566 | 1..566 | 3006 | 100 | Plus |
| alpha-Est1-PA | 565 | CG1031-PA | 1..565 | 1..566 | 1915 | 60.1 | Plus |
| alpha-Est2-PB | 566 | CG2505-PB | 1..566 | 1..566 | 1761 | 56.2 | Plus |
| alpha-Est2-PA | 566 | CG2505-PA | 1..566 | 1..566 | 1761 | 56.2 | Plus |
| alpha-Est9-PC | 569 | CG1128-PC | 8..568 | 9..565 | 1439 | 48.3 | Plus |
