BS31896.complete Sequence
782 bp assembled on 2012-08-22
GenBank Submission: KX803685
> BS31896.complete
GAAGTTATCAGTCGACATGAAAACGGGCAGCAACAACAACCACATCTCCG
CCAGCAGCAGCAGCAGCAACAACAACAACAACAGCTCATTGGTGCAACAG
CAGCAGCAACGCTCCACCACTTCCGTTTCCGTCTCCTCGTCTCACATTGT
CACCGAGTGGGAGGATGGCATCATTTTCGATGTGGACGATCCCGACTTTT
GCAATCTGGCCACCGACAAGCTGAACTTCATAGTGCCATCAGCAGCCAAT
ATGTCGATCGCCAGTGTTCACGGTCCCCAAATCGCCGACATCTGCAGTCC
CCTGTCGCATCACAATCTCGGTCTGTCTGCCTCGCTGCCAGATCTGGTGG
GCAGTCCCCTGGAGATCAGCATGGACAACGTGCTGACCATTGAGGAGCTG
CGCCAGCACATGGGCTCCTGCTTCACCTGCGGCGTCTCCTGGACGGACGA
CCATGTGTCCCTCGACTGCAGCGAATGCGGTGGCTACAGCCTGGAGCGTC
CCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCAATGGAAACGTGATTTC
GCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGGTGGGCGTGTGCATCAG
CTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCCGTGGGAGCAGGCGCTG
GAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAATCAACTGCGCCTGGCC
CAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCACGTCGACGGCGAGCAA
AAGCGGTCGCATCTAGAAGCTTTCTAGACCAT
BS31896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RB | 750 | CG4710-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
| Pino-RC | 516 | CG4710-PC | 1..516 | 251..766 | 2580 | 100 | Plus |
| Pino-RA | 516 | CG4710-PA | 1..516 | 251..766 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RB | 1980 | CG4710-RB | 151..901 | 17..767 | 3755 | 100 | Plus |
| Pino-RC | 2130 | CG4710-RC | 518..1051 | 234..767 | 2670 | 100 | Plus |
| Pino-RA | 2079 | CG4710-RA | 467..1000 | 234..767 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1116441..1116690 | 556..307 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 1128129..1128345 | 233..17 | 1085 | 100 | Minus |
| 2L | 23513712 | 2L | 1115733..1115944 | 767..556 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 1117443..1117518 | 307..232 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:52:28 has no hits.
BS31896.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:27:26 Download gff for
BS31896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 151..900 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:24 Download gff for
BS31896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 151..900 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:15:44 Download gff for
BS31896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 151..900 | 17..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:15:44 Download gff for
BS31896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1115734..1115943 | 557..766 | 100 | <- | Minus |
| 2L | 1116441..1116690 | 307..556 | 100 | <- | Minus |
| 2L | 1117444..1117516 | 234..306 | 100 | <- | Minus |
| 2L | 1128129..1128345 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:24 Download gff for
BS31896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1115734..1115943 | 557..766 | 100 | <- | Minus |
| arm_2L | 1116441..1116690 | 307..556 | 100 | <- | Minus |
| arm_2L | 1117444..1117516 | 234..306 | 100 | <- | Minus |
| arm_2L | 1128129..1128345 | 17..233 | 100 | | Minus |
BS31896.pep Sequence
Translation from 16 to 765
> BS31896.pep
MKTGSNNNHISASSSSSNNNNNSSLVQQQQQRSTTSVSVSSSHIVTEWED
GIIFDVDDPDFCNLATDKLNFIVPSAANMSIASVHGPQIADICSPLSHHN
LGLSASLPDLVGSPLEISMDNVLTIEELRQHMGSCFTCGVSWTDDHVSLD
CSECGGYSLERPCPLCDGQCGVQWKRDFAMSHACSQARWVGVCISYPEVV
AGVQLPVGAGAGAATSCAAAAANQLRLAQELCSRLEQLSTSTASKSGRI*
BS31896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-PB | 249 | CG4710-PB | 1..249 | 1..249 | 1309 | 100 | Plus |
| Pino-PC | 171 | CG4710-PC | 1..171 | 79..249 | 911 | 100 | Plus |
| Pino-PA | 171 | CG4710-PA | 1..171 | 79..249 | 911 | 100 | Plus |
