BS31929.complete Sequence
2930 bp assembled on 2013-04-18
GenBank Submission: KX802973
> BS31929.complete
GAAGTTATCAGTCGACATGGGCACCCACTACTTTGGCAACGTGCCCGCCG
CCTACATCGAATTGGACGCTAACAGCATCAAGGAGGCCATCAAGAAGCAA
GTTGAATACTATTTCAGCGTCGATAATCTTACCGGCGACTTCTTTTTGCG
CCGCAAAATGGACCCCGAGGGCTATATCCCAGTTACTCTGATCGCCTCGT
TCCATCGCGTTCTCGCACTGACCACCGATGTGGCTGTGATCGTAAACGCC
ATTAAGGAATCGGATAAACTGGAGCTCTTTGAGGGCTATAAGGTGCGCAC
CAAGACGACACCGACCACCTGGCCCATCACGGAAGTGCCGGAGGTCAACG
AAGGGGAACCGAAGGCTATTGGCACACTGGAGCAGGAGCAGTTGGAGCAG
AATGATGGTCAGGAAAAGCTGGAGGAGCAGACTGAGGCGGATTCCCCGCC
GCCCATTCTCACATCGGCGATGGCCACAAAGCCGCTGAACAGCATTCCGC
CGCCGCCAATGCCGCGAAACCCCCAGAATCTGGTGCCCAAAATGTTGCAG
GATAAGCAACAGTCGAGATCCTCGACCATTGCGGCTCTAAACTCTGTGAA
TGCGATCAGTGCGCTGACCCAGCAAGTGGAGGGTGGTGCCGCTGAGCTGG
CTGGACATTTGAGTGGACTGGCTGAGAGTGTGAAGCCCAAGTCGACATCG
ACGCCAGACAAGAGAAATGCTGCTTCAGCGGGCAATGGAGCTGGGTCAGC
AGCTGCTTTGGTGGCGGAGCCGGAGGGCATATGGAAAGAGGTAAAGAGAC
GCTCCAAAACAAATGCTATCAAAGAAAACGCTACTACACCACCACAACAA
CAACAGCCACCGCTTTCACAAACGCTCAACAACAATAACGATAATGTCAA
AACGAACAACACCTCGTCCAAGTCCAAGTCCTCGTCCAACAACGCCCCAT
CCAACGCCTCATCATCAGCCACTGTGTGTGTAACCACGAACAATGCTTCC
TCAGCCACCAAAGCAACCACCAAAACCACAACCACCTCCACCGCCACTAC
CACCACGAACAACAACATTAAATCTGGCAATGCTGCTTACTCCAAAACCC
ACTCCAAATCCTCATCCAAAACAGCTGCTCCGCCATCCGCTCAGTGCCAT
GCCGAAAAGGAAGAACTAGACTTCCAGTTTGACGAGGAGCTAATGGACCC
CCTACCCCCTGGAACCGGACGCATCAACAACTTCACCGAAAACTTCTCCG
ACGACGACGAATCCGACTACGAGTTTGCCGATCGTGACATTAACAAGCTA
CTGATTGTGGCCCAAGTGGGCCGCGCACCTAAGCACGAGGGCTACGACCG
CACCGCCGACTTTACGTCGCGTACGAAAATCACCCAGGATCTGGAGAACA
TCATCAACGATGGACTGGTTAACTACGAAGAGGATCTGTGGACCACCACC
AATGTGGTTGCCGATTACAAGACTGTCAATGTGATTTCCCAGGCAGACTT
CGAAAAACTGGCTGGTGGTCGAAACAAATCGGTGTTGCCGCCGCAGGTGG
TGCCACCACCGCCACCATTTGAGGAAGATCTGGATGAAACCCTGGTGGGT
GACACCACTCTCAACTCCACGCTGAACAACACTCTCAAGTCCCGACGTGC
CCGCTTCTATGCTGCTCCCAACTCGCACTCGATTGATCCCCGAACGCCAA
GAAAGAGGAAACTCCGTCACACCGCCAATCCTCCAGTGGAGGCCCACGTC
GGTTGGCTGCTTGACACTGTGGAGCATCGTCCTCGCACCACCTCGATGGG
TTCCTCGGCGGGCACATCGCCTACCGCCTCGTCGTACGGATCGTTCGGAT
CGTCGGTGCCACAGTCGCTGCCCGTATTCCAGCATCCATCACATGCTCTT
CTCAAGGAGAACAACTTCACCCAACAGGCCTACCACAAGTACCATTCGCG
CTGCCTCAAGGAGCGCCGGCGCTTGGGCTACGGTCAGTCGCAGGAGATGA
ACACCCTGTACCGCTTCTGGTCGTTCTTCCTGCGCGAGAACTTCAACAAG
AGCATGTACAACGAGTTCCGATCGTTGGCGCTGGAGGATGCCGGCAATGG
TTTCCGCTACGGTCTTGAATGCCTCTTCCGGTTCTTCTCGTACGGCTTGG
AGAAGAAGTTCAGACCGAATATCTATCAGGATTTCCAGGACGAGACGATT
GCCGATTATGAAACAGGTCAACTGTACGGCCTCGAGAAGTTCTGGGCCTT
CCTGAAATACTACAAGAATGGTGAGAAGTTGGAGGTGCAGCCCAAGCTGG
CCGAGTACCTGAAGAGCTTCAAGAACATTGAGGACTTCCGCGTGGTGGAG
CCGGAGATCAACGAGATGCTGCAAGGAGTGGGCAGCCTGAATCCAGGCCG
CCAGCTCAATCGCCACCGCAGTGTGTCGGAGAGCGATGGCACAGCTGTAA
TTGCGGCCGGCGGTCGTCGCCTCAACACGACCATCACCAACCGCAGCGAC
TACGTGGGCAGGTTGCTGCAGCAACAGCACCAACAACAGCAGCAGCAGCA
GCATCACCAGTATCAGCAGGGGTACGGCGGCTACAATCAGCAGCAAAACC
GCAGGCGCACAGGCTCCTTCGGCAGCACCACAGTGCGCATTCGCAGCGGC
TCCCTGGGCAACAAGCCGCAGGTGGCCAATCGCAATCAGGGATCGCAGCA
CGAGTTGCGACGCGGCGGCAGCAATTCTGGCCTGGCGCCACACAAGCGAC
AGCAGCAACAGAAGCCGAAGCCAGGAGCAGGATCACAGACAGGCTCAACA
CGTGCCACCACATCAGCGGCAGCTACAGCAACAACAGCCGCATCAGCAGC
AACATCAACAGCAGCGACGCCAGCGGTAACGGTATCTTCGGGGTCATCGT
CGTCGAAGAAGTAGAAGCTTTCTAGACCAT
BS31929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| larp-RH | 5022 | CG42551-PH | 2124..5022 | 16..2914 | 14480 | 100 | Plus |
| larp-RG | 5022 | CG42551-PG | 2124..5022 | 16..2914 | 14480 | 100 | Plus |
| larp-RF | 4230 | CG42551-PF | 1332..4230 | 16..2914 | 14480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| larp-RH | 7919 | CG42551-RH | 2601..5499 | 16..2914 | 14480 | 100 | Plus |
| larp-RG | 7915 | CG42551-RG | 2597..5495 | 16..2914 | 14480 | 100 | Plus |
| larp-RF | 7070 | CG42551-RF | 1752..4650 | 16..2914 | 14480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28321371..28323486 | 2218..103 | 10580 | 100 | Minus |
| 3R | 32079331 | 3R | 28320582..28321282 | 2914..2214 | 3490 | 99.9 | Minus |
| 3R | 32079331 | 3R | 28323649..28323735 | 102..16 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3475..3553 | 1044..1119 | 154 | 68.4 | Plus |
BS31929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:44:53 Download gff for
BS31929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| larp-RD | 2747..5644 | 17..2914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:40 Download gff for
BS31929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| larp-RF | 1753..4650 | 17..2914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:28 Download gff for
BS31929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| larp-RF | 1753..4650 | 17..2914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:28 Download gff for
BS31929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28320582..28321279 | 2217..2914 | 99 | <- | Minus |
| 3R | 28321373..28323486 | 103..2216 | 100 | <- | Minus |
| 3R | 28323649..28323734 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:40 Download gff for
BS31929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24146304..24147001 | 2217..2914 | 99 | <- | Minus |
| arm_3R | 24147095..24149208 | 103..2216 | 100 | <- | Minus |
| arm_3R | 24149371..24149456 | 17..102 | 100 | | Minus |
BS31929.pep Sequence
Translation from 16 to 2913
> BS31929.pep
MGTHYFGNVPAAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDP
EGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPT
TWPITEVPEVNEGEPKAIGTLEQEQLEQNDGQEKLEEQTEADSPPPILTS
AMATKPLNSIPPPPMPRNPQNLVPKMLQDKQQSRSSTIAALNSVNAISAL
TQQVEGGAAELAGHLSGLAESVKPKSTSTPDKRNAASAGNGAGSAAALVA
EPEGIWKEVKRRSKTNAIKENATTPPQQQQPPLSQTLNNNNDNVKTNNTS
SKSKSSSNNAPSNASSSATVCVTTNNASSATKATTKTTTTSTATTTTNNN
IKSGNAAYSKTHSKSSSKTAAPPSAQCHAEKEELDFQFDEELMDPLPPGT
GRINNFTENFSDDDESDYEFADRDINKLLIVAQVGRAPKHEGYDRTADFT
SRTKITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAG
GRNKSVLPPQVVPPPPPFEEDLDETLVGDTTLNSTLNNTLKSRRARFYAA
PNSHSIDPRTPRKRKLRHTANPPVEAHVGWLLDTVEHRPRTTSMGSSAGT
SPTASSYGSFGSSVPQSLPVFQHPSHALLKENNFTQQAYHKYHSRCLKER
RRLGYGQSQEMNTLYRFWSFFLRENFNKSMYNEFRSLALEDAGNGFRYGL
ECLFRFFSYGLEKKFRPNIYQDFQDETIADYETGQLYGLEKFWAFLKYYK
NGEKLEVQPKLAEYLKSFKNIEDFRVVEPEINEMLQGVGSLNPGRQLNRH
RSVSESDGTAVIAAGGRRLNTTITNRSDYVGRLLQQQHQQQQQQQHHQYQ
QGYGGYNQQQNRRRTGSFGSTTVRIRSGSLGNKPQVANRNQGSQHELRRG
GSNSGLAPHKRQQQQKPKPGAGSQTGSTRATTSAAATATTAASAATSTAA
TPAVTVSSGSSSSKK*
BS31929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| larp-PH | 1673 | CG42551-PH | 709..1673 | 1..965 | 4996 | 100 | Plus |
| larp-PG | 1673 | CG42551-PG | 709..1673 | 1..965 | 4996 | 100 | Plus |
| larp-PF | 1409 | CG42551-PF | 445..1409 | 1..965 | 4996 | 100 | Plus |
| larp-PE | 965 | CG42551-PE | 1..965 | 1..965 | 4996 | 100 | Plus |
| larp-PA | 965 | CG42551-PA | 1..965 | 1..965 | 4996 | 100 | Plus |
