BS31935.complete Sequence
3110 bp assembled on 2013-04-18
GenBank Submission: KX805117
> BS31935.complete
GAAGTTATCAGTCGACATGCAGCACAACGTTCATGCCGCCCGGCCAGCGC
CCCACATCCGAGCTGCGCACCATCACAGCCACAGCCATGCCCACATGCAT
CTGCATCCCGGCATGGAGCAGCACCTGGGCCCCAGTCTTCAGCAGCAACA
GCAGCCGCCACCGCCGCCCCAGCAGCCTCCACATCGCGACCTCCACGCAC
GTCTGAATCATCACCATCTCCACGCTCAGCAGCAGCAGCAGCAACAGACG
TCGTCGAACCAAGCCGGCGCCGTCGCTGCGGCTGGGGCTGCCTATCACCA
CGGCAACATCAACAGCAACAGCGGCAGCAACATCTCCAGCAACAGCAACC
AGATGCAGAAGATCCGCCAACAGCACCAGCACTTGAGTAGCAGCAACGGC
CTTCTTGGCAATCAACCTCCTGGTCCGCCGCCACAGGCCTTCAATCCATT
GGCGGGCAATCCGGCAGCTCTCGCCTACAATCAGCTTCCTCCGCATCCGC
CGCACCACATGGCCGCCCATCTGGGCAGCTATGCCGCTCCACCGCCTCAC
TATTACATGAGCCAGGCGAAGCCCGCGAAATATAATCACTATGGCAGCAA
TGCAAACAGCAACAGCGGCAGCAACAACAGCAACAGCAACTATGCCCCCA
AGGCCATACTGCAGAATACGTATAGGAATCAGAAGGTGGTGGTTCCACCA
GTGGTGCAGGAAGTAACCCCCGTGCCGGAACCGCCAGTGACCACCAATAA
TGCCACCACCAACAGCACCAGCAACAGCACAGTCATAGCTAGCGAGCCTG
TAACCCAAGAGGATACTTCTCAGAAGCCGGAGACTAGACAGGAGCCAGCT
TCAGCGGACGATCATGTCAGCACGGGGAATATCGATGCTACGGGAGCACT
GTCCAACGAGGACACGAGCAGTTCAGGACGCGGGGGCAAGGACAAGACCC
CAATGTGCCTGGTCAATGAGTTGGCCAGGTACAACAAGATCACGCATCAA
TATCGGTTGACTGAAGAACGAGGACCTGCCCACTGCAAGACCTTCACGGT
GACACTGATGCTGGGCGATGAGGAGTACTCGGCGGACGGTTTCAAGATTA
AGAAAGCGCAACATTTGGCGGCTAGTAAGGCTATCGAGGAAACCATGTAC
AAGCATCCGCCGCCGAAGATTCGCCGCAGCGAAGAAGGCGGTCCCATGCG
CACACACATTACGCCGACGGTGGAATTGAATGCCCTGGCCATGAAGTTGG
GACAGCGTACCTTCTACCTGCTGGATCCCACTCAGATTCCTCCCACGGAT
TCCATAGTGCCGCCGGAGTTTGCCGGCGGTCATTTACTAACTGCGCCAGG
ACCAGGGATGCCGCAACCACCTCCACCACCTGCTTACGCTCTCCGCCAGC
GGCTTGGCAATGGATTCGTGCCCATTCCATCGCAGCCGATGCATCCGCAT
TTCTTTCATGGACCAGGTCAGCGACCGTTTCCTCCGAAGTTTCCATCACG
CTTTGCGCTGCCACCGCCTCTCGGAGCTCATGTACATCATGGACCGAATG
GCCCATTTCCATCCGTGCCTACGCCACCCAGCAAAATCACCCTGTTTGTG
GGCAAGCAGAAGTTTGTGGGCATCGGACGCACACTGCAGCAAGCGAAACA
TGACGCTGCGGCGAGAGCGCTGCAGGTTCTCAAGACACAGGCCATATCTG
CCTCTGAGGAGGCTCTCGAGGATTCGATGGATGAGGGTGACAAGAAGTCG
CCCATCTCGCAGGTTCACGAGATCGGAATTAAGCGCAACATGACCGTTCA
TTTTAAGGTGTTGCGCGAGGAGGGGCCGGCGCACATGAAGAACTTTATAA
CAGCCTGCATTGTGGGATCTATTGTCACCGAAGGAGAAGGAAATGGCAAA
AAAGTGTCCAAGAAGCGTGCCGCGGAAAAGATGCTCGTCGAGTTGCAAAA
GCTGCCGCCCCTTACGCCCACCAAGCAAACGCCATTGAAGCGGATTAAGG
TTAAGACACCCGGCAAAAGTGGGGCAGCTGCCCGAGAAGGTTCGGTTGTG
TCGGGCACTGATGGTCCTACGCAAACGGGCAAGCCGGAGAGACGTAAACG
CCTCAATCCGCCGAAGGACAAGCTGATAGACATGGACGATGCGGATAATC
CCATTACAAAGCTAATTCAACTGCAGCAGACGCGTAAGGAAAAGGAACCC
ATTTTCGAGCTGATAGCCAAAAACGGCAATGAAACCGCTCGACGACGGGA
ATTCGTTATGGAGGTCTCCGCCAGCGGGAGCACAGCCCGTGGAACAGGCA
ACAGCAAGAAGTTGGCAAAGCGAAATGCTGCACAGGCTCTGTTTGAACTG
CTGGAAGCTGTTCAAGTCACACCAACCAACGAAACACAGTCATCGGAGGA
ATGCAGCACTTCGGCAACAATGTCCGCCGTTACAGCGCCCGCAGTGGAGG
CAACTGCGGAAGGCAAAGTGCCCATGGTAGCAACGCCAGTGGGTCCCATG
CCAGGCATTTTAATACTGCGCCAGAACAAGAAACCAAAGAAGAGGGATCA
AATTGTAATTGTCAAGTCTAACGTGGAATCCAAAGAGGAGGAGGCCAATA
AGGAGGTGGCAGTTGCAGCTGAGGAGAATAGCAACAACAGTGCAAACTCT
GGCGACAGCAGCAACAGCAGCAGCGGCGATTCGCAAGCCACAGAGGCGGC
TAGTGAGAGTGCACTGAATACCTCAACCGGCAGCAATACGAGTGGTGTGA
GTAGCAACAGCAGCAATGTTGGAGCCAACACGGATGGTAACAACCATGCC
GAGAGTAAAAACAACACGGAGAGTAGCAGCAACAGTACGAGTAACACACA
AAGCGCTGGTGTGCACATGAAGGAGCAGCTCTTGTACCTTAGTAAACTGC
TGGACTTTGAGGTCAACTTCTCGGACTATCCGAAAGGCAATCATAACGAG
TTCCTGACCATCGTGACATTGTCCACACATCCGCCGCAGATCTGCCATGG
CGTTGGCAAGAGCTCCGAGGAGTCGCAGAATGATGCTGCAAGCAATGCCT
TGAAAATCCTCAGCAAGCTGGGGCTCAACAATGCCATGAAATAAAAGCTT
TCTAGACCAT
BS31935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-RC | 3078 | CG5753-PC | 1..3078 | 17..3094 | 15390 | 100 | Plus |
| stau-RA | 3081 | CG5753-PA | 1..3081 | 17..3094 | 15325 | 99.9 | Plus |
| stau-RB | 2745 | CG5753-PB | 1..2745 | 353..3094 | 13645 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-RC | 3509 | CG5753-RC | 275..3352 | 17..3094 | 15390 | 100 | Plus |
| stau-RA | 5240 | CG5753-RA | 275..3355 | 17..3094 | 15325 | 99.9 | Plus |
| stau-RB | 4910 | CG5753-RB | 129..3025 | 201..3094 | 14405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18120728..18122863 | 2336..201 | 10680 | 100 | Minus |
| 2R | 25286936 | 2R | 18120022..18120400 | 2913..2535 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 18120467..18120665 | 2534..2336 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 18119781..18119965 | 3094..2910 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 18124694..18124878 | 201..17 | 925 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2968 | 109..779 | 286 | 53.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6842 | 298..397 | 247 | 74.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6880 | 297..402 | 241 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2936 | 297..921 | 240 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2510 | 227..436 | 230 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2661 | 61..364 | 227 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6946 | 203..396 | 221 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6946 | 140..348 | 218 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6669..7081 | 9..402 | 215 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6915 | 203..381 | 212 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2391 | 301..400 | 208 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2930 | 51..639 | 207 | 53.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6857 | 297..397 | 204 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6827 | 297..397 | 200 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7004 | 140..397 | 200 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..7021 | 140..384 | 194 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2754..2989 | 137..381 | 193 | 57.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 276..380 | 177 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6800 | 288..400 | 176 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1159 | 290..402 | 171 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6857 | 2750..2879 | 150 | 59.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3357 | 304..380 | 146 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1584 | 294..349 | 138 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6888 | 2609..2765 | 137 | 60.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..204 | 2617..2704 | 137 | 67 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9234 | 2617..2704 | 137 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1160 | 117..193 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6927 | 61..189 | 133 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1587 | 2624..2674 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1552..1589 | 294..330 | 124 | 84.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1139 | 115..185 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6825 | 740..779 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6934 | 2630..2847 | 116 | 57.5 | Plus |
BS31935.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:02:04 Download gff for
BS31935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RC | 328..3403 | 17..3092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:33 Download gff for
BS31935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RC | 275..3350 | 17..3092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:20 Download gff for
BS31935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stau-RC | 275..3350 | 17..3092 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:20 Download gff for
BS31935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18124694..18124878 | 17..201 | 100 | | Minus |
| 2R | 18119783..18119963 | 2912..3092 | 100 | <- | Minus |
| 2R | 18120024..18120400 | 2535..2911 | 100 | <- | Minus |
| 2R | 18120467..18120664 | 2337..2534 | 100 | <- | Minus |
| 2R | 18120728..18122862 | 202..2336 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:33 Download gff for
BS31935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14012199..14012383 | 17..201 | 100 | | Minus |
| arm_2R | 14007288..14007468 | 2912..3092 | 100 | <- | Minus |
| arm_2R | 14007529..14007905 | 2535..2911 | 100 | <- | Minus |
| arm_2R | 14007972..14008169 | 2337..2534 | 100 | <- | Minus |
| arm_2R | 14008233..14010367 | 202..2336 | 100 | <- | Minus |
BS31935.pep Sequence
Translation from 16 to 3093
> BS31935.pep
MQHNVHAARPAPHIRAAHHHSHSHAHMHLHPGMEQHLGPSLQQQQQPPPP
PQQPPHRDLHARLNHHHLHAQQQQQQQTSSNQAGAVAAAGAAYHHGNINS
NSGSNISSNSNQMQKIRQQHQHLSSSNGLLGNQPPGPPPQAFNPLAGNPA
ALAYNQLPPHPPHHMAAHLGSYAAPPPHYYMSQAKPAKYNHYGSNANSNS
GSNNSNSNYAPKAILQNTYRNQKVVVPPVVQEVTPVPEPPVTTNNATTNS
TSNSTVIASEPVTQEDTSQKPETRQEPASADDHVSTGNIDATGALSNEDT
SSSGRGGKDKTPMCLVNELARYNKITHQYRLTEERGPAHCKTFTVTLMLG
DEEYSADGFKIKKAQHLAASKAIEETMYKHPPPKIRRSEEGGPMRTHITP
TVELNALAMKLGQRTFYLLDPTQIPPTDSIVPPEFAGGHLLTAPGPGMPQ
PPPPPAYALRQRLGNGFVPIPSQPMHPHFFHGPGQRPFPPKFPSRFALPP
PLGAHVHHGPNGPFPSVPTPPSKITLFVGKQKFVGIGRTLQQAKHDAAAR
ALQVLKTQAISASEEALEDSMDEGDKKSPISQVHEIGIKRNMTVHFKVLR
EEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLPPLT
PTKQTPLKRIKVKTPGKSGAAAREGSVVSGTDGPTQTGKPERRKRLNPPK
DKLIDMDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEV
SASGSTARGTGNSKKLAKRNAAQALFELLEAVQVTPTNETQSSEECSTSA
TMSAVTAPAVEATAEGKVPMVATPVGPMPGILILRQNKKPKKRDQIVIVK
SNVESKEEEANKEVAVAAEENSNNSANSGDSSNSSSGDSQATEAASESAL
NTSTGSNTSGVSSNSSNVGANTDGNNHAESKNNTESSSNSTSNTQSAGVH
MKEQLLYLSKLLDFEVNFSDYPKGNHNEFLTIVTLSTHPPQICHGVGKSS
EESQNDAASNALKILSKLGLNNAMK*
BS31935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stau-PC | 1025 | CG5753-PC | 1..1025 | 1..1025 | 5364 | 100 | Plus |
| stau-PA | 1026 | CG5753-PA | 1..1026 | 1..1025 | 5352 | 99.9 | Plus |
| stau-PB | 914 | CG5753-PB | 1..914 | 113..1025 | 4729 | 99.9 | Plus |
| ct-PD | 2165 | CG11387-PD | 575..752 | 31..208 | 165 | 27.8 | Plus |
| ct-PC | 2383 | CG11387-PC | 793..970 | 31..208 | 165 | 27.8 | Plus |
