BS32013.complete Sequence
1361 bp assembled on 2013-04-18
GenBank Submission: KX804005
> BS32013.complete
GAAGTTATCAGTCGACATGTTTTTAAGACGACTTTTAAACGACTACACCA
AGGCAGTTCGCCTGAAAACCCTTTGCAATCCCTGGAATCGCCACAAATCC
TTCGCCGCAGCGATGTCAGAGGCTCTAGATAAACTGGAGGTGGAGAAGGA
AGCCAGGAAAGAGGCCAAAGAACTGGAGGGCGAAGCCGTGAAGGACGCCA
ACCGCATCAAGAGAACACTTAAACGCAAGAAATGGGTCGATTGGAAGGAG
CAGGACGAGAAGGATGCCGCCAACGGCGTGAAGCGAGCGCCGTTCGATCC
CGCCGACCGGATCAAGCGCAAGAAGAGCGCCATCCTGCTTAGCTACTGCG
GTGCGAACTACTATGGTATGCAGCGCAATCCCGGCATGCAGACCATCGAG
GAGGAGCTCTTCAAAGCCATGCTAAAGCACAAGTGGATTACAGAGGACAG
CTTTGAGCAGATTCAGATTTCCTGTTTCCAAAGAGCGGCCAGGACCGACA
AGGGCGTCTCCGCCGCCCGCCAGGTGTGCTCCGTCAAGCTGCCTGAGGAG
CTGGACCTGGAGGCCTTCAATGCCGATCTGCCGCAACAGATCCGTCTGTT
TGGCGTAGAACGCGTGACTAAGGGCTTCAATGCCAAGGATCAATGCAATG
CTCGGACCTACACCTACACACTGCCCACCGTGGCCTTTGCTCCGTTTGAG
GAAAAGGTCGACGACGTGCACGACACCTTCCGGATTTCACCAGAGCTGCT
GCAGAAGGTTAAAGAAACCCTGAAGCTCTACGAGGGCACGAAGAACTTCC
ACAACTTCACCAGCAAGAAAAGCTTTCTGGATCCTTCGTCCAAGCGCTTC
ATCATGTCCTTTACGAGCAGCGAGCCATTCCGGAGTCCCCAGGACATCGA
ATTTGTCACACTTAAGGTTAAGGGTCAGAGCTTTATGCTGCACCAGATTC
GCAAGATGGTGGGTCTAGCCATTGCCATTGTAAGGGGGAACACGACGGCG
GCCACTTTAGAGCGGGCACTGACGGAGGAGCGTCTGGACCTGCCGATGGC
CCCTGGACTGGGCCTCGTGCTGGACACAGTGCACTACGAGCGCTACAACG
ATCGCTACGGCAAGGACGGCATCCACAATCCGCTGACATGGCAGGCGCAG
GAGGCGCAAGTCCAGGAGTTTATCGAGAGGGAGATCTTTAGCCAGATCTA
TAAGACGGAAGCCGAGCAGCGTAACATGCTCGACTGGATAGGAACATTGC
ATTATCACTCGTACGACACGCGGACGGAGGACGCGCCTCCACCTTCCTCC
GAAGACAAGAAGGTTAAAGGTGGTGATGACGACAATGACGAATAAAAGCT
TTCTAGACCAT
BS32013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4159-RB | 1329 | CG4159-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
| CG4159-RA | 1233 | CG4159-PA | 1..1233 | 113..1345 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4159-RB | 1466 | CG4159-RB | 76..1404 | 17..1345 | 6645 | 100 | Plus |
| CG4159-RA | 1462 | CG4159-RA | 76..1400 | 17..1345 | 6550 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20591086..20591611 | 1345..820 | 2630 | 100 | Minus |
| 3R | 32079331 | 3R | 20592008..20592495 | 542..55 | 2440 | 100 | Minus |
| 3R | 32079331 | 3R | 20591676..20591952 | 819..543 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 20592557..20592596 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:15:24 has no hits.
BS32013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:46:53 Download gff for
BS32013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4159-RB | 84..1402 | 25..1343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:45 Download gff for
BS32013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4159-RB | 84..1402 | 25..1343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:32 Download gff for
BS32013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4159-RB | 84..1402 | 25..1343 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:32 Download gff for
BS32013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20591676..20591952 | 543..819 | 100 | <- | Minus |
| 3R | 20591088..20591611 | 820..1343 | 100 | <- | Minus |
| 3R | 20592008..20592493 | 57..542 | 100 | <- | Minus |
| 3R | 20592557..20592588 | 25..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:45 Download gff for
BS32013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16416810..16417333 | 820..1343 | 100 | <- | Minus |
| arm_3R | 16417398..16417674 | 543..819 | 100 | <- | Minus |
| arm_3R | 16417730..16418215 | 57..542 | 100 | <- | Minus |
| arm_3R | 16418279..16418310 | 25..56 | 100 | | Minus |
BS32013.pep Sequence
Translation from 16 to 1344
> BS32013.pep
MFLRRLLNDYTKAVRLKTLCNPWNRHKSFAAAMSEALDKLEVEKEARKEA
KELEGEAVKDANRIKRTLKRKKWVDWKEQDEKDAANGVKRAPFDPADRIK
RKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQ
ISCFQRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERV
TKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKE
TLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLK
VKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEERLDLPMAPGLGL
VLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQIYKTEAE
QRNMLDWIGTLHYHSYDTRTEDAPPPSSEDKKVKGGDDDNDE*
BS32013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4159-PB | 442 | CG4159-PB | 1..442 | 1..442 | 2307 | 100 | Plus |
| CG4159-PA | 410 | CG4159-PA | 1..410 | 33..442 | 2135 | 100 | Plus |
