BS32060.complete Sequence
1559 bp assembled on 2012-12-19
GenBank Submission: KX802943
> BS32060.complete
GAAGTTATCAGTCGACATGGCCGACGTGGAAGTACGCAAGGAGAAGAAAA
AGAAGAAGATCAAGGAGGAGCCCTTGGACGGCGATGACATTGGCACGCTG
CAGAAGCAGGGCAACTTCCAAATCAAGCCCTCCTCCAAGATCGCCGAGCT
GGACACCTCGCAATGGCCGCTGCTCCTGAAGAACTTCGACAAGTTGAACA
TCCGTTCCAACCACTACACTCCGCTGGCGCACGGATCGTCGCCCCTGAAC
CGCGACATCAAAGAGTACATGAAGACTGGCTTCATCAACCTGGACAAGCC
GTCGAACCCCAGCTCCCACGAGGTGGTGGCCTGGATCAAGAAAATCCTCA
AGGTGGAGAAGACAGGCCACTCCGGCACGCTGGATCCCAAAGTCACGGGT
TGCCTGATTGTTTGTATTGACAGGGCCACCCGTCTGGTGAAGTCCCAGCA
GAGCGCCGGCAAGGAGTACGTGGCCATCTTCAAGCTGCACGGAGCCGTGG
AGTCGGTGGCCAAGGTGCGTCAGGGCCTGGAGAAGCTGCGTGGTGCCCTC
TTCCAGAGACCTCCACTCATCTCCGCCGTAAAGCGTCAGTTGCGCGTTCG
TACTGTCTACGACAGCAAGCTGTTGGACTACGATGAAACCCGAAATATGG
GTGTTTTTTGGGTTAGTTGCGAGGCCGGCTCCTACATCCGTACCATGTGC
GTCCATCTTGGTCTCGTACTGGGTGTCGGTGGCCAGATGCTGGAGCTCCG
CCGTGTCCGCTCGGGCATTCAGTCTGAGCGCGATGGTATGGTGACCATGC
ACGATGTTTTGGACGCCATGTGGCTGTACGAAAACCACAAGGACGAGTCT
ATGCTGCGACGTGTGATCAAGCCGCTAGAAGGTCTGCTGGTCAACCACAA
GCGCATTATTATGAAGGACAGTTCGGTCAACGCCGTTTGCTATGGTGCCA
AGATTACATTGCCCGGTGTCCTGCGCTACGAGGATGGCATTGAAATCGAT
CAGGAGATCGTCATTTGCACCACCAAGGGTGAGGCCATTTGCCTGGCCAT
CGCCCTCATGACCACAGCCACTATGGCCTCTTGTGACCATGGTGTGGTGG
CCAAGATCAAGCGAGTGATCATGGAGCGAGACACATACCCGCGCAAGTGG
GGATTGGGACCAAAGGCGTCGGCCAAGAAGGCGCTCATTGCCGCCGGCAA
GCTAGACAAGTTCGGAAGGCCCAATGAAAACACACCTAAGGAGTGGCTGA
CCGGTTATGTCGACTACAATGCCAAGAAGCCAGCAGCTCAAGAAGTCTCC
CCCACAAATGGCTCCAGTGAACCCAGCAAACGCAAGTTAAGCACCTCCAG
CGTTGAGGAAACTGCTGCGGCGGCGGTATCCGAGGAGACTCCTTCCAAGG
ACAAAAAGAAGAAGAAAAAGAAGCACAAGGGCGACGAGGAAGCCCCAGAA
GCCGCTGAGGAGGAGGCAGAGCCAGTAGAAAAGGAGAAGAAAAAGAAGAA
GAAGAAGGACAAGGATAGGGACAGAGACGAAGCTCAGGAATAGAAGCTTT
CTAGACCAT
BS32060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop60B-RF | 1527 | CG3333-PF | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| Nop60B-RC | 1527 | CG3333-PC | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| Nop60B-RB | 1527 | CG3333-PB | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop60B-RF | 3412 | CG3333-RF | 79..1605 | 17..1543 | 7635 | 100 | Plus |
| Nop60B-RC | 2184 | CG3333-RC | 79..1605 | 17..1543 | 7635 | 100 | Plus |
| Nop60B-RB | 2218 | CG3333-RB | 79..1605 | 17..1543 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24176426..24176831 | 925..1330 | 2030 | 100 | Plus |
| 2R | 25286936 | 2R | 24175027..24175398 | 29..400 | 1860 | 100 | Plus |
| 2R | 25286936 | 2R | 24175916..24176193 | 650..927 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 24175472..24175726 | 398..652 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 24176893..24177105 | 1331..1543 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:02:13 has no hits.
BS32060.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-19 16:42:55 Download gff for
BS32060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop60B-RC | 231..1757 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:51 Download gff for
BS32060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop60B-RB | 79..1605 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:51 Download gff for
BS32060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop60B-RB | 79..1605 | 17..1543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:51 Download gff for
BS32060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24176427..24176831 | 926..1330 | 100 | -> | Plus |
| 2R | 24176893..24177105 | 1331..1543 | 100 | | Plus |
| 2R | 24175917..24176191 | 651..925 | 100 | -> | Plus |
| 2R | 24175028..24175396 | 30..398 | 100 | -> | Plus |
| 2R | 24175473..24175724 | 399..650 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:51 Download gff for
BS32060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20062551..20062919 | 30..398 | 100 | -> | Plus |
| arm_2R | 20062996..20063247 | 399..650 | 100 | -> | Plus |
| arm_2R | 20063440..20063714 | 651..925 | 100 | -> | Plus |
| arm_2R | 20063950..20064354 | 926..1330 | 100 | -> | Plus |
| arm_2R | 20064416..20064628 | 1331..1543 | 100 | | Plus |
BS32060.pep Sequence
Translation from 16 to 1542
> BS32060.pep
MADVEVRKEKKKKKIKEEPLDGDDIGTLQKQGNFQIKPSSKIAELDTSQW
PLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSS
HEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKE
YVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS
KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSG
IQSERDGMVTMHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMK
DSSVNAVCYGAKITLPGVLRYEDGIEIDQEIVICTTKGEAICLAIALMTT
ATMASCDHGVVAKIKRVIMERDTYPRKWGLGPKASAKKALIAAGKLDKFG
RPNENTPKEWLTGYVDYNAKKPAAQEVSPTNGSSEPSKRKLSTSSVEETA
AAAVSEETPSKDKKKKKKKHKGDEEAPEAAEEEAEPVEKEKKKKKKKDKD
RDRDEAQE*
BS32060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop60B-PF | 508 | CG3333-PF | 1..508 | 1..508 | 2616 | 100 | Plus |
| Nop60B-PC | 508 | CG3333-PC | 1..508 | 1..508 | 2616 | 100 | Plus |
| Nop60B-PB | 508 | CG3333-PB | 1..508 | 1..508 | 2616 | 100 | Plus |
| Nop60B-PA | 508 | CG3333-PA | 1..508 | 1..508 | 2616 | 100 | Plus |
| Nop60B-PG | 227 | CG3333-PG | 1..218 | 1..218 | 1083 | 97.2 | Plus |
