BS32084.complete Sequence
1802 bp assembled on 2013-04-18
GenBank Submission: KX800274
> BS32084.complete
GAAGTTATCAGTCGACATGCCCACCATTGGAGTTAAACGTGATCTGCTCT
TCGAGGCGCTCGGCAAGACGTACACCGATGATGAGTTCCAGGATCTCTGC
TTTGCCTTCGGGTTGGAGCTGGACGAAGTGACCACGGAGAAGCAGATGCT
GACCAAGGAACAGGGCGATGTGGCAGCGGCGGCCAATGCCAGCGAGGAGA
TCATATACAGAATCGACATACCCGCCAATCGGTATGATCTGCTCTGTTTA
GAGGGCTTGGTCACGGGTCTGCTGGTATTCCAGGGAAAACTCAAGCCCCC
TAAGTTCCAGTTTGTGGAGCTGGCCAAGAGGCAGGTGCTGAAGATTGACC
CTTCGACGGCGCAGATCCGTCCGTACGCTGTGGCCGCTGTGCTCCGGAAC
GTGACTTTTACGCAGGCCTCCTACAACAGCTTCATCGATCTGCAGGACAA
GCTGCATCAGAACATCTGCCGGAAGCGTACTCTGGTGGCTATCGGAACGC
ACGATCTGGACACCCTACAGGGACCCTTCAGTTACGAGGCTCTGGCGCCG
GATCAAATCAAGTTCAAACCACTTAACCAAACCAAGGAGATGACTGGCAG
CGAGCTCATGGACTTCTATTCCACGCATGCGCAGCTGAAGCAATATCTGC
CAATCATTCGGGAATCACCGGTTTATCCAGTGATCTACGATGCCAACCGT
GTGGTGCTTTCACTGCCGCCCATCATCAACGGTGATCATTCCAAGATTAC
GCTGAAGACCAAGAACGTATTCATCGAGTGCACGGCCACGGATAGAACGA
AGGCAAAAGTGGTGCTGGACACCATTGTGTGCCTCTTTTCCGAGCACTGC
GCCCAGAAGTTTACCGTGGAGCCGTGCGATGTGGTGCAACCCGATGGCAG
TGTGATCTCCTATCCGGAACTGGAGGTGCGCGAGGAGAGGATATCGGTAA
AGCGCGCCAATGCCTATATTGGCATCGATGAGCCGGCGGAAAAGCTCGCA
GATATGCTGACGCGCATGTATCTGGAGGCCAAGGTCGATGGCGACTCGCT
GGTGGTTAAGATCCCGCCCACACGGCACGACGTCATCCACGCGTGCGACA
TCTACGAGGACGTGGCTATTGCCTACGGCTACAACAACATTAAGAAGTCC
CTGCCTGCATTCATGCAAATTGCCAAGCAATTCCCACTTAACAAACTGAC
CGAACAACTGCGCGAACAGGTGGCCCAGGCGGGCTTCACCGAGGCGCTGA
CCTTTACGCTCTGCTCACGGGATGACATTGGGCGCAAGCTGAACAAGAAC
ATCGACGCCTTGCCGGCCGTGCACATAGGCAATCCCAAGACCCTGGAGTT
CCAAGTAGTGCGCACGACCCTATTGCCCGGTCTCCTCAAGACGCTGGTGG
CCAATCGCAAGATGCCGCTACCCCTGAAGCTCTTCGAGATCAGCGACGTG
GTGGTTGCGGATGAGAGCACGGAAGTTGGTGCTCGCAATGAGCGAAGGGT
GTGTGCTGTAAACTGCAATAAGACCGCTGGTTTCGAGGTGGTTCACGGCC
TGCTAGATCGCGTGATGCAATTGCTCTCTGTGCCCTGGAAATCGGCCAGC
GGGACCAAGGGCTATTACCTTCAGGCCACCGAGGATCCCAGCTACTTCCC
CGGTCGCTGTGCTAATGTAATGTACGACGGTGTTGTCATCGGCAAGATTG
GGGTTTTGCATCCCACAGTGCTGCAAGCCTTCGAGCTGACCACGCCTTGT
TCGGCGGTGGAATTCACCATTGAGCCTTTCGTCTAAAAGCTTTCTAGACC
AT
BS32084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5706-RA | 1770 | CG5706-PA | 1..1770 | 17..1786 | 8850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5706-RA | 1960 | CG5706-RA | 127..1903 | 17..1793 | 8870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24250733..24252078 | 1634..289 | 6730 | 100 | Minus |
| 3R | 32079331 | 3R | 24252145..24252303 | 288..130 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 24250517..24250676 | 1793..1634 | 785 | 99.4 | Minus |
| 3R | 32079331 | 3R | 24252496..24252553 | 74..17 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 24252366..24252421 | 130..75 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:16:02 has no hits.
BS32084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:52:30 Download gff for
BS32084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5706-RA | 106..1873 | 17..1784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:54 Download gff for
BS32084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5706-RA | 127..1894 | 17..1784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:49 Download gff for
BS32084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5706-RA | 127..1894 | 17..1784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:49 Download gff for
BS32084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24250526..24250675 | 1635..1784 | 100 | <- | Minus |
| 3R | 24250733..24252078 | 289..1634 | 100 | <- | Minus |
| 3R | 24252145..24252302 | 131..288 | 100 | <- | Minus |
| 3R | 24252366..24252421 | 75..130 | 100 | <- | Minus |
| 3R | 24252496..24252553 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:54 Download gff for
BS32084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20076248..20076397 | 1635..1784 | 100 | <- | Minus |
| arm_3R | 20076455..20077800 | 289..1634 | 100 | <- | Minus |
| arm_3R | 20077867..20078024 | 131..288 | 100 | <- | Minus |
| arm_3R | 20078088..20078143 | 75..130 | 100 | <- | Minus |
| arm_3R | 20078218..20078275 | 17..74 | 100 | | Minus |
BS32084.pep Sequence
Translation from 16 to 1785
> BS32084.pep
MPTIGVKRDLLFEALGKTYTDDEFQDLCFAFGLELDEVTTEKQMLTKEQG
DVAAAANASEEIIYRIDIPANRYDLLCLEGLVTGLLVFQGKLKPPKFQFV
ELAKRQVLKIDPSTAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQNI
CRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMDF
YSTHAQLKQYLPIIRESPVYPVIYDANRVVLSLPPIINGDHSKITLKTKN
VFIECTATDRTKAKVVLDTIVCLFSEHCAQKFTVEPCDVVQPDGSVISYP
ELEVREERISVKRANAYIGIDEPAEKLADMLTRMYLEAKVDGDSLVVKIP
PTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPLNKLTEQLRE
QVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRT
TLLPGLLKTLVANRKMPLPLKLFEISDVVVADESTEVGARNERRVCAVNC
NKTAGFEVVHGLLDRVMQLLSVPWKSASGTKGYYLQATEDPSYFPGRCAN
VMYDGVVIGKIGVLHPTVLQAFELTTPCSAVEFTIEPFV*
BS32084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5706-PA | 589 | CG5706-PA | 1..589 | 1..589 | 3029 | 100 | Plus |
