BS32086.complete Sequence
1724 bp assembled on 2013-04-18
GenBank Submission: KX800474
> BS32086.complete
GAAGTTATCAGTCGACATGAATAAGTTTGTTTCCCACAACCTTGGTCGCG
ATCCATATCGGACCTTCAGCCCAGAAATGTACCCGTTATCAAGCCCATTG
GGACCGCATGGAACTGAAATGGCGGAAGGTAATGGCGAACTGTTGGATGA
CATTAACCAGAAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATT
ATCCCAAGCTGCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTG
GATGAGATCTACAAAACCGGCAAGTTGGCTCACGCCGAGCTGGATGAGCG
CGCCCTGGACGCGCTCAAGGAGTTTCCCGTCGATGGTGCCTTGAATGTGT
TGGGACAGTTCCTGGAATCGAACCTGGAGCACGTGTCAAACAAGTCCGCC
TACCTATGCGGCGTGATGAAGACGTACCGACAGAAGAGTCGAGCCAGCCA
ACAGGGCGTGGCCGCGCCCGCAACTGTCAAAGGTCCCGACGAGGACAAGA
TCAAGAAAATCCTCGAGCGCACCGGCTACACATTAGATGTGACGACAGGT
CAGCGTAAATACGGCGGACCGCCGCCGCATTGGGAGGGAAATGTGCCAGG
CAACGGTTGCGAGGTTTTCTGCGGCAAGATACCCAAGGACATGTACGAGG
ACGAACTGATTCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGA
CTCATGATGGACCCGATGACGGGCACAAATCGTGGTTATGCATTTGTCAC
ATTCACAAATCGCGAAGCGGCCGTCAATGCAGTGCGACAGCTCGATAATC
ACGAAATAAAACCCGGCAAGTGTCTAAAAATAAATATAAGCGTACCGAAT
CTGCGCCTTTTCGTAGGCAATATTCCCAAGTCAAAGGGCAAAGATGAAAT
TTTAGAGGAATTTGGTAAACTTACAGCTGGCCTATACGAGGTAATCATAT
ACAGTTCGCCAGATGATAAGAAAAAGAATCGCGGCTTTTGCTTTCTTGAG
TACGAGTCACACAAGGCGGCGTCTTTGGCCAAACGAAGACTTGGCACAGG
AAGAATTAAGGTTTGGGGATGTGATATAATAGTCGACTGGGCCGATCCAC
AGGAGGAGCCGGATGAGCAAACAATGTCCAAGGTTAAAGTTCTTTATGTG
CGAAATCTTACCCAGGACGTCTCAGAGGATAAACTAAAGGAACAATTTGA
GCAATACGGAAAAGTGGAACGCGTTAAGAAAATTAAAGACTATGCCTTTA
TACACTTTGAGGATCGTGATAGCGCCGTCGAAGCTATGCGTGGCCTTAAT
GGCAAGGAGATCGGCGCCTCGAATATTGAGGTCTCTCTAGCCAAACCCCC
CTCGGACAAAAAGAAAAAGGAGGAGATTCTGCGTGCTCGTGAGCGCCGCA
TGATGCAAATGATGCAAGCGCGTCCCGGGATCGTGGGAAACCTGTCGCCG
ACACATCCTAGCATAATGTCCTTGACGCCCATGCGCCCAGGGGCGCGCAT
GCCGCTGCGTACGCCGATACCCCGTGAATACGTAGTCGGTAAACGTAAGT
TCGATGGAGGTCACCAAAATCCGGCAGATGTTAAGCGACGTTACCCGAGC
GGTTTAATAGGAAATGGCGGCAGTTGGGGCAGTTTACCGCTACCACAGCA
ACCTTTAGGCACCAATGGTGAACAGTGGTACATGGATACGTTTTCGGCAT
GGAGTTAAAAGCTTTCTAGACCAT
BS32086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syp-RA | 1692 | CG17838-PA | 1..1692 | 17..1708 | 8430 | 99.9 | Plus |
| Syp-RH | 1605 | CG17838-PH | 12..1605 | 115..1708 | 7940 | 99.9 | Plus |
| Syp-RE | 1716 | CG17838-PE | 125..1716 | 117..1708 | 7930 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syp-RA | 2301 | CG17838-RA | 509..2202 | 17..1710 | 8440 | 99.9 | Plus |
| Syp-RH | 2214 | CG17838-RH | 520..2115 | 115..1710 | 7950 | 99.9 | Plus |
| Syp-RF | 6794 | CG17838-RF | 598..2192 | 116..1710 | 7945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20791935..20792251 | 234..550 | 1570 | 99.7 | Plus |
| 3R | 32079331 | 3R | 20792311..20792555 | 546..790 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 20805946..20806124 | 1532..1710 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 20797534..20797678 | 1188..1332 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 20797135..20797279 | 918..1062 | 695 | 98.6 | Plus |
| 3R | 32079331 | 3R | 20793714..20793851 | 789..926 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 20797343..20797474 | 1059..1190 | 645 | 99.2 | Plus |
| 3R | 32079331 | 3R | 20791744..20791865 | 116..237 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 20797745..20797853 | 1329..1437 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 20798314..20798409 | 1437..1532 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 20772795..20772882 | 29..116 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:15:48 has no hits.
BS32086.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:48:54 Download gff for
BS32086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17838-RA | 509..2198 | 17..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:47 Download gff for
BS32086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syp-RA | 509..2198 | 17..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:41 Download gff for
BS32086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syp-RA | 509..2198 | 17..1706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:41 Download gff for
BS32086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20797144..20797277 | 927..1060 | 100 | -> | Plus |
| 3R | 20797345..20797473 | 1061..1189 | 99 | -> | Plus |
| 3R | 20797536..20797676 | 1190..1330 | 100 | -> | Plus |
| 3R | 20797747..20797853 | 1331..1437 | 100 | -> | Plus |
| 3R | 20798315..20798409 | 1438..1532 | 100 | -> | Plus |
| 3R | 20805947..20806120 | 1533..1706 | 100 | | Plus |
| 3R | 20772795..20772882 | 29..116 | 100 | -> | Plus |
| 3R | 20791745..20791863 | 117..235 | 100 | -> | Plus |
| 3R | 20791937..20792249 | 236..548 | 99 | -> | Plus |
| 3R | 20792314..20792555 | 549..790 | 100 | -> | Plus |
| 3R | 20793716..20793851 | 791..926 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:47 Download gff for
BS32086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16623258..16623398 | 1190..1330 | 100 | -> | Plus |
| arm_3R | 16623469..16623575 | 1331..1437 | 100 | -> | Plus |
| arm_3R | 16624037..16624131 | 1438..1532 | 100 | -> | Plus |
| arm_3R | 16598517..16598604 | 29..116 | 100 | -> | Plus |
| arm_3R | 16617467..16617585 | 117..235 | 100 | -> | Plus |
| arm_3R | 16617659..16617971 | 236..548 | 99 | -> | Plus |
| arm_3R | 16618036..16618277 | 549..790 | 100 | -> | Plus |
| arm_3R | 16619438..16619573 | 791..926 | 100 | -> | Plus |
| arm_3R | 16622866..16622999 | 927..1060 | 100 | -> | Plus |
| arm_3R | 16623067..16623195 | 1061..1189 | 99 | -> | Plus |
| arm_3R | 16631669..16631842 | 1533..1706 | 100 | | Plus |
BS32086.pep Sequence
Translation from 16 to 1707
> BS32086.pep
MNKFVSHNLGRDPYRTFSPEMYPLSSPLGPHGTEMAEGNGELLDDINQKA
DDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGKLAHAELDERALDAL
KEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRASQQGVAA
PATVKGPDEDKIKKILERTGYTLDVTTGQRKYGGPPPHWEGNVPGNGCEV
FCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNRE
AAVNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFG
KLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVW
GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKV
ERVKKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKK
KEEILRARERRMMQMMQARPGIVGNLSPTHPSIMSLTPMRPGARMPLRTP
IPREYVVGKRKFDGGHQNPADVKRRYPSGLIGNGGSWGSLPLPQQPLGTN
GEQWYMDTFSAWS*
BS32086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syp-PA | 563 | CG17838-PA | 1..563 | 1..563 | 2993 | 100 | Plus |
| Syp-PE | 571 | CG17838-PE | 27..571 | 18..563 | 2815 | 97.6 | Plus |
| Syp-PH | 534 | CG17838-PH | 5..534 | 34..563 | 2808 | 100 | Plus |
| Syp-PF | 529 | CG17838-PF | 1..529 | 35..563 | 2803 | 100 | Plus |
| Syp-PC | 529 | CG17838-PC | 1..529 | 35..563 | 2681 | 95.7 | Plus |
