BS32113.complete Sequence
1853 bp assembled on 2013-05-17
GenBank Submission: KX804293
> BS32113.complete
GAAGTTATCAGTCGACATGAGGACGTTGACGGAAAGCAGGCGGCGCCAAA
GTGGCTCCTCCGGGTGCAAAAAGGACTCCGAGTCGGATGACGATGAGAAT
ACCATCTGTAGCAGGGCGGCCATTAAGAGGAGTGTGGTCTACTATCTCAA
GAACAGCACCCTCCATGGATTAAAGTACATCGCCGAAGAGAGCATCACCA
TTCCGGAACGCATCTTTTTTGGTCTTGCCTTTGTGCTGGTGGTGATCCTT
TCCGTGTTCTTCATATCCAACGTGTACGTAAAGTGGAGTGCTTCGCCCAT
AATCATTTCGACCAGTGCCAAGCAAAAGCTGACCAGCAACATGCCATTTC
CGGCGATCACGATCTGTAATCTCAACCAGGCGCTGCTAAGCAAAGTGGAT
CGCATTGGACGGACCAGCACGAATTTCTCGCTGCTGATGGGTCTGTGTGA
CCAGGGCGGGGACACGACCATCTCGTACATCGGCACCTGGAAGTACTTCA
AGGCGATCCTGGTGGACGTGGCCCAGCCGTGCGAGAAAATGCTCCTGTAC
TGCAGCTTCGGATCGCGCGAGGAGGACTGCTCCTGGCTCTTCACCTCCAT
ACTGACGGACGATGGGCTGTGCTGCAACTTCAATGCCCTGCATCCGTCGT
ATCTTATACGGAACTACAGTGACGATGTGCGGCTGGAGACGGCTCATCCG
AATACCCGTTATGAGCTCATCGATTGGACACCAGAGAAGGGTTATGCCCG
CAATTTGCCGGAGTTCTACTTTCCGCGCACCTCGGGGGGCACGGGCATCC
GCATGGGTCTCACCGTCGTGCTGAACGCCTCCATAGCGGAGTATTACTGC
ACCAAGTCGATGAGTGTTGGTTTCAAGGTTCTTGTGCACAATCCCGCCGA
GCTGCCAAAAGTGAGCAACTATGGCTTCGTTGTGACCGCGGGACGCGAGG
CACGGATACCCATCGAACCAGTCTATGAGGATGCCCTGCCCACGATACGG
TCAATTAAGAAATCGGTGCGTCGCTGCCTCTTCTCCGATGAGAATGACCT
GGCCTACTATCGGACATATTCGCGTAAGAACTGCGAGCTGGAATGCGAGG
CGAAGTTGCTGCTACGCGAGTGCAGCTGTGTGCTGTACTATCTGCCCCGG
ATCGATCCGTTGGCCAGGGTGTGCGGACCCAACGATAATCAGTGCACGGA
TCGGGTGCAAACCGAGATTGAGTCATCGCTGACGAATCTGTCCTGCGAGA
ACTGCTGGCCGGGTTGCTTCGAGCTAACATACAGGGCCACACTTTCAACG
GCTTCGATCGTTTCGGATCCACGATTTCAGGCCGGCGAGAATCTACCCGA
ATATATCTTCCACGGGCCATATAGCAATGCCAGCGAGATTTCGATATTGC
ACTTCTACTACATGACCAACATATTTCGCAGCACCACCAAGTCCGAGATG
TTTGGCTTTACCGAATTCTTGTCTAATACGGGCGGCCTTTTGGGACTTTT
CATGGGCTTCAGCATTTTTTCGGTGATCGAGATCTTCTTCTACATCACCG
TCCGTCCGTACTGCGCCTCGCGAACACTCCGGCAGCGCCACAAACGCCGC
CTGGAGCAGCTGAGCTGGCTGACGCCGATCAGGATGCCCGTGCGCAGAGC
ACTGCGTCGCAATCGAGGTGGTCTCCTCCGGAATCCGCCGCCGCCGGCGT
ACAGTGATCTGCAAAAGTTCCGCGGGAAACTGGACAAGCCGGAGACATGC
AAGCGGAAACTTTGGCGGACGCTGCAAGTGCGGCCAGTAGTGGATCGGGC
GGATGAGGAACTGCCCACCTATCCCTACCTGGACTAAAAGCTTTCTAGAC
CAT
BS32113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk28-RA | 1821 | CG4805-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk28-RA | 2190 | CG4805-RA | 240..2061 | 17..1838 | 9110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16806633..16807302 | 210..879 | 3350 | 100 | Plus |
| X | 23542271 | X | 16807356..16807961 | 871..1476 | 3000 | 99.7 | Plus |
| X | 23542271 | X | 16808021..16808386 | 1473..1838 | 1830 | 100 | Plus |
| X | 23542271 | X | 16806307..16806500 | 17..210 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:36:54 has no hits.
BS32113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:24:44 Download gff for
BS32113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk28-RA | 1..1819 | 17..1835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:08 Download gff for
BS32113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk28-RA | 240..2058 | 17..1835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:08 Download gff for
BS32113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk28-RA | 240..2058 | 17..1835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:08 Download gff for
BS32113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16806307..16806500 | 17..210 | 100 | -> | Plus |
| X | 16806634..16807300 | 211..877 | 100 | -> | Plus |
| X | 16807363..16807957 | 878..1472 | 100 | -> | Plus |
| X | 16808021..16808383 | 1473..1835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:08 Download gff for
BS32113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16700340..16700533 | 17..210 | 100 | -> | Plus |
| arm_X | 16700667..16701333 | 211..877 | 100 | -> | Plus |
| arm_X | 16701396..16701990 | 878..1472 | 100 | -> | Plus |
| arm_X | 16702054..16702416 | 1473..1835 | 100 | | Plus |
BS32113.pep Sequence
Translation from 16 to 1836
> BS32113.pep
MRTLTESRRRQSGSSGCKKDSESDDDENTICSRAAIKRSVVYYLKNSTLH
GLKYIAEESITIPERIFFGLAFVLVVILSVFFISNVYVKWSASPIIISTS
AKQKLTSNMPFPAITICNLNQALLSKVDRIGRTSTNFSLLMGLCDQGGDT
TISYIGTWKYFKAILVDVAQPCEKMLLYCSFGSREEDCSWLFTSILTDDG
LCCNFNALHPSYLIRNYSDDVRLETAHPNTRYELIDWTPEKGYARNLPEF
YFPRTSGGTGIRMGLTVVLNASIAEYYCTKSMSVGFKVLVHNPAELPKVS
NYGFVVTAGREARIPIEPVYEDALPTIRSIKKSVRRCLFSDENDLAYYRT
YSRKNCELECEAKLLLRECSCVLYYLPRIDPLARVCGPNDNQCTDRVQTE
IESSLTNLSCENCWPGCFELTYRATLSTASIVSDPRFQAGENLPEYIFHG
PYSNASEISILHFYYMTNIFRSTTKSEMFGFTEFLSNTGGLLGLFMGFSI
FSVIEIFFYITVRPYCASRTLRQRHKRRLEQLSWLTPIRMPVRRALRRNR
GGLLRNPPPPAYSDLQKFRGKLDKPETCKRKLWRTLQVRPVVDRADEELP
TYPYLD*
BS32113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk28-PA | 606 | CG4805-PA | 1..606 | 1..606 | 3207 | 100 | Plus |
| ppk12-PA | 569 | CG10972-PA | 24..504 | 38..514 | 885 | 38.1 | Plus |
| ppk8-PH | 569 | CG32792-PH | 32..532 | 33..533 | 827 | 32 | Plus |
| ppk5-PB | 474 | CG33289-PB | 4..462 | 52..510 | 755 | 33.5 | Plus |
| ppk5-PC | 405 | CG33289-PC | 4..377 | 52..422 | 667 | 34.9 | Plus |
