BS32116.complete Sequence
1253 bp assembled on 2013-04-19
GenBank Submission: KX806485
> BS32116.complete
GAAGTTATCAGTCGACATGATATTGCTCTGGGCGATCGTTCTTATATCGA
GTGTGGATCGAACAAATGCTCGATGTCTAGAATCTGTGCACTTGGAACAC
GGTTCGACGGAAATAGTAAATGGATCCATTATTTTTCATTGCGATCAAGG
ATACTTTCTACAAGGATCGAAAGTGTTCACCTGCGATCGCGGTATTCCTC
GAGGGAAAAAACCATTTTGCGCCAAAAGCGGTTGCCAGGAATACGAACAA
ATACAGAACGGATTTGTTTTAAATGCTCCTATGAAAGCTAAGATCATATG
TTCGGATGGCCATGGGTTGGTTGGAAATCGCATTGCCTATTGCGATGGCG
AGAAGTGGAGCACCCAGTTGGGATCCTGCGCATTAAGACGCCAGACGATC
GATGTTTCCTGTGATTTCGAGAGCGAGGATATGTGCGGCTGGACGGCGGA
ATTGAGCTTCTTGGGAACTTGGAAACGGGTCAGTACGGTGGCCGACTTTC
ACTCTGAGAAAACGGGTCCCCAAAAAGATCACACGTTCCAAAACCAATCC
ATCGGACACTACGTGCGCATGGAGACGGAAAGCGATGCTTTTGGAACCTA
CCACTTCCTATCGCCACTGTATCCCAAGGAGCTCAGTTTGAGTGGCGCCT
GCTTCCAGTTTCACTACTTCATGTTCGGCAGCGGAGTGGGTAGCCTGCTG
GTGTCCATAAAACCCGTTTCGGTGACTATAGGAGACATATTTAAAACAAA
CCATCCCTACAAGTTCGACCAATTCGTGATGACTGGATCACAAGGTGCCA
GGTGGCTGGAGCACACGATCGATATCAATAAGATGGATGAGGACTTCCAA
GTGATCTTTACCGCCACGGATGCGAGGTCCCAATACGGAGATATTGCCAT
CGACGACGTGAAGCTGATGGCAGCTAAGGAATGTGCCAGGAGGTCTACCT
TCATCGAGGAACCAAAAAAACCAATAGAAGAATCGGATATCACGGATTCA
CTGGGCTACCAAATGACCGACTGCTCTGGTCGTTGTGGTCAGGACTTTGT
TCGGGGAAGGTACATCAATGAAGGGTGTCGATGCCAAGAATCATGTCTGG
TGAACGGCAATTGTTGCCTAAATTATGTCAAGGAGTGCCATAAAGATCTG
GTCATAGCTCCGTATAATGAACTCAAATTCTGGAGGCTTTGGAATCTTTG
GAGCGGTGATAGTAATGTGACTGTCGTACCTAAATAAAAGCTTTCTAGAC
CAT
BS32116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sr-CIV-RA | 1221 | CG3212-PA | 1..1221 | 17..1237 | 6090 | 99.9 | Plus |
| Sr-CII-RB | 1800 | CG8856-PB | 319..915 | 323..919 | 320 | 71 | Plus |
| Sr-CII-RA | 1800 | CG8856-PA | 319..915 | 323..919 | 320 | 71 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sr-CIV-RA | 1390 | CG3212-RA | 97..1317 | 17..1237 | 6090 | 99.9 | Plus |
| Sr-CII-RB | 2369 | CG8856-RB | 745..1341 | 323..919 | 320 | 71 | Plus |
| Sr-CII-RA | 2043 | CG8856-RA | 419..1015 | 323..919 | 320 | 71 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3523144..3523672 | 753..225 | 2630 | 99.8 | Minus |
| 2L | 23513712 | 2L | 3522594..3523077 | 1237..754 | 2420 | 100 | Minus |
| 2L | 23513712 | 2L | 3523753..3523960 | 224..17 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 12209992..12210108 | 919..803 | 285 | 82.9 | Minus |
| 2L | 23513712 | 2L | 4122126..4122545 | 305..721 | 280 | 71.7 | Plus |
| 2L | 23513712 | 2L | 4122748..4122869 | 802..923 | 265 | 81.1 | Plus |
| 2R | 25286936 | 2R | 12210313..12210699 | 706..323 | 265 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:22:31 has no hits.
BS32116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:57:31 Download gff for
BS32116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sr-CIV-RA | 1..1219 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:05 Download gff for
BS32116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sr-CIV-RA | 97..1315 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:27:15 Download gff for
BS32116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sr-CIV-RA | 97..1315 | 17..1235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:27:15 Download gff for
BS32116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3522596..3523077 | 754..1235 | 100 | <- | Minus |
| 2L | 3523144..3523672 | 225..753 | 99 | <- | Minus |
| 2L | 3523753..3523960 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:05 Download gff for
BS32116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3522596..3523077 | 754..1235 | 100 | <- | Minus |
| arm_2L | 3523144..3523672 | 225..753 | 99 | <- | Minus |
| arm_2L | 3523753..3523960 | 17..224 | 100 | | Minus |
BS32116.pep Sequence
Translation from 16 to 1236
> BS32116.pep
MILLWAIVLISSVDRTNARCLESVHLEHGSTEIVNGSIIFHCDQGYFLQG
SKVFTCDRGIPRGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHG
LVGNRIAYCDGEKWSTQLGSCALRRQTIDVSCDFESEDMCGWTAELSFLG
TWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDAFGTYHFLSP
LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKF
DQFVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKL
MAAKECARRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYI
NEGCRCQESCLVNGNCCLNYVKECHKDLVIAPYNELKFWRLWNLWSGDSN
VTVVPK*
BS32116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sr-CIV-PA | 406 | CG3212-PA | 1..406 | 1..406 | 2211 | 100 | Plus |
| Sr-CI-PB | 629 | CG4099-PB | 8..393 | 6..386 | 1021 | 50.5 | Plus |
| Sr-CI-PA | 629 | CG4099-PA | 8..393 | 6..386 | 1021 | 50.5 | Plus |
| Sr-CII-PB | 599 | CG8856-PB | 5..391 | 3..380 | 985 | 49.9 | Plus |
| Sr-CII-PA | 599 | CG8856-PA | 5..391 | 3..380 | 985 | 49.9 | Plus |
