BS32140.complete Sequence
680 bp assembled on 2013-04-19
GenBank Submission: KX802073
> BS32140.complete
GAAGTTATCAGTCGACATGAACCTTTTGGCGAAAATCATACTGTTCCTTT
TCACTCTCGAGGCTGTGAGTGCTTTAGAGGCCAATCTCACTTCGTGGCGA
CATCACAGAAGGCAAAAGCGGTTCCTGATTTATCAGAATGGCGGTGTAAT
CAAGTTCGTTTCGGGATGTGCATTTCCGGCTCCGTTTATGGAGAAAAAGG
CATGGCGCCAGTTGGTTTGGCTGATGAACTTTCACTATCAGTTCAATGAG
CCGCAAACTCCAATCTACTGGTGGAAACTTTGGGATGGCTCCCGAAATCT
CAAGGGACCATTGACCCAACCTGCTCCTCCATCCGTTCCAGCTCGTCTTT
TGGTGGACGAGCCTCAACTTCTGCTATTCAAGTTCGCCGAGGCCTATATG
AACCAGTTGGGTCAAAATGGTAGTGCCTGTCTGGATCGTCTGATCTGCGA
GAATGGTCAGGTGGATGAGCATAGTGGACTCTACGCCCAACTGCTCCACA
GGTTGTTAAGACCTCATCAAACGCTGGACGTGAGATATTTGGATGCCTAC
AGGATGGGTCGCCATGGCGTTGACTGCCGAAATGCCTTTCCAGAGGCCCA
TCATTGCATTTTGGATGACTACCTACACCTCCATGAGCGAGGACCGAAAC
AGAGTTTTCTTTAGAAGCTTTCTAGACCAT
BS32140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13869-RA | 648 | CG13869-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13869-RA | 753 | CG13869-RA | 29..678 | 15..664 | 3250 | 100 | Plus |
| CG11099-RB | 2173 | CG11099-RB | 1751..2108 | 510..153 | 1790 | 100 | Minus |
| CG11099-RA | 2319 | CG11099-RA | 1897..2254 | 510..153 | 1790 | 100 | Minus |
| CG11099-RB | 2173 | CG11099-RB | 1543..1698 | 664..509 | 780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20238778..20239135 | 510..153 | 1790 | 100 | Minus |
| 2R | 25286936 | 2R | 20238570..20238725 | 664..509 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 20239197..20239323 | 154..28 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:23:59 has no hits.
BS32140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 18:12:33 Download gff for
BS32140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13869-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:48 Download gff for
BS32140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13869-RA | 31..678 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:27:48 Download gff for
BS32140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13869-RA | 31..678 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:27:48 Download gff for
BS32140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20238570..20238723 | 511..664 | 100 | <- | Minus |
| 2R | 20238778..20239133 | 155..510 | 100 | <- | Minus |
| 2R | 20239197..20239323 | 28..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:48 Download gff for
BS32140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16126075..16126228 | 511..664 | 100 | <- | Minus |
| arm_2R | 16126283..16126638 | 155..510 | 100 | <- | Minus |
| arm_2R | 16126702..16126828 | 28..154 | 100 | | Minus |
BS32140.pep Sequence
Translation from 16 to 663
> BS32140.pep
MNLLAKIILFLFTLEAVSALEANLTSWRHHRRQKRFLIYQNGGVIKFVSG
CAFPAPFMEKKAWRQLVWLMNFHYQFNEPQTPIYWWKLWDGSRNLKGPLT
QPAPPSVPARLLVDEPQLLLFKFAEAYMNQLGQNGSACLDRLICENGQVD
EHSGLYAQLLHRLLRPHQTLDVRYLDAYRMGRHGVDCRNAFPEAHHCILD
DYLHLHERGPKQSFL*
BS32140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13869-PA | 215 | CG13869-PA | 1..215 | 1..215 | 1177 | 100 | Plus |
| CG14829-PB | 219 | CG14829-PB | 31..213 | 23..202 | 238 | 33.3 | Plus |
| CG14826-PC | 219 | CG14826-PC | 25..208 | 23..196 | 224 | 32.6 | Plus |
| CG14826-PA | 219 | CG14826-PA | 25..208 | 23..196 | 224 | 32.6 | Plus |
| CG33342-PB | 219 | CG33342-PB | 15..202 | 8..193 | 198 | 29.5 | Plus |
