BS32171.complete Sequence
1124 bp assembled on 2013-04-19
GenBank Submission: KX805954
> BS32171.complete
GAAGTTATCAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGC
TGCAGGATGAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAG
GGAATCCTCGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCA
GGACATCGGCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGC
TGTTGTTCAGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATC
CTGTTCCACGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGC
CGAGATCCTGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGG
GTGTTGTCCCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTG
GATGACCTGGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTT
CGCCAAGTGGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACC
AGTCGATCCTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGC
CAGTCGCAGCGCATCGTCCCAATTGTGGAGCCCGAGGTTCTGCCCGATGG
CGATCACGATCTGGACCGCGCCCAGAAGGTCACCGAGACCGTCCTGGCCG
CCGTCTACAAGGCCCTGAGCGACCACCACGTCTACCTGGAGGGTACTCTG
CTGAAGCCCAACATGGTCACCGCCGGTCAGTCGGCCAAGAAGAACACCCC
CGAGGAGATCGCCCTGGCCACCGTGCAGGCTCTGCGCCGCACCGTTCCCG
CCGCCGTTACTGGCGTGACCTTCCTGTCTGGAGGTCAGTCCGAGGAGGAG
GCCACCGTCAACCTGAGTGCCATCAACAACGTTCCCTTGATCCGCCCATG
GGCCCTCACCTTCTCGTACGGTCGTGCCCTGCAGGCCTCCGTCCTGCGTG
CCTGGGCTGGCAAGAAGGAGAACATTGCTGCCGGCCAGAACGAGCTGCTT
AAGCGCGCCAAGGCCAATTCCCAGGCCTGTCAGGGTATTTACGTGCCCGG
CTCAATTCCGTCGTTTGCCGGCAATGCCAACCTCTTTGTCGCCCAGCACA
AATACTAAAAGCTTTCTAGACCAT
BS32171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RJ | 1092 | CG6058-PJ | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| Ald-RL | 1092 | CG6058-PL | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| Ald-RH | 1092 | CG6058-PH | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RJ | 1614 | CG6058-RJ | 277..1368 | 17..1108 | 5460 | 100 | Plus |
| Ald-RL | 1615 | CG6058-RL | 278..1369 | 17..1108 | 5460 | 100 | Plus |
| Ald-RH | 1618 | CG6058-RH | 281..1372 | 17..1108 | 5460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26258020 | 813..17 | 3985 | 100 | Minus |
| 3R | 32079331 | 3R | 26256932..26257137 | 1013..808 | 1015 | 99.5 | Minus |
| 3R | 32079331 | 3R | 26414213..26414832 | 98..717 | 505 | 72.1 | Plus |
| 3R | 32079331 | 3R | 26256212..26256309 | 1108..1011 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:25:12 has no hits.
BS32171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 18:27:41 Download gff for
BS32171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RH | 193..1282 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:23 Download gff for
BS32171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RH | 281..1370 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:13 Download gff for
BS32171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RH | 281..1370 | 17..1106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:13 Download gff for
BS32171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26256214..26256307 | 1013..1106 | 100 | <- | Minus |
| 3R | 26256933..26257132 | 813..1012 | 100 | <- | Minus |
| 3R | 26257225..26258020 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:23 Download gff for
BS32171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22081936..22082029 | 1013..1106 | 100 | <- | Minus |
| arm_3R | 22082655..22082854 | 813..1012 | 100 | <- | Minus |
| arm_3R | 22082947..22083742 | 17..812 | 100 | | Minus |
BS32171.pep Sequence
Translation from 16 to 1107
> BS32171.pep
MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVE
NTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKK
KGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRC
VLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLD
RAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIAL
ATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFS
YGRALQASVLRAWAGKKENIAAGQNELLKRAKANSQACQGIYVPGSIPSF
AGNANLFVAQHKY*
BS32171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-PJ | 363 | CG6058-PJ | 1..363 | 1..363 | 1855 | 100 | Plus |
| Ald-PL | 363 | CG6058-PL | 1..363 | 1..363 | 1855 | 100 | Plus |
| Ald-PH | 363 | CG6058-PH | 1..363 | 1..363 | 1855 | 100 | Plus |
| Ald-PM | 361 | CG6058-PM | 1..361 | 1..363 | 1761 | 96.1 | Plus |
| Ald-PK | 361 | CG6058-PK | 1..361 | 1..363 | 1761 | 96.1 | Plus |
