Clone BS32174 Report

Search the DGRC for BS32174

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:321
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptHr83-RA
Protein status:BS32174.pep: full length peptide match
Sequenced Size:869

Clone Sequence Records

BS32174.complete Sequence

869 bp assembled on 2013-04-19

GenBank Submission: KX801275

> BS32174.complete
GAAGTTATCAGTCGACATGTCGAACTTCAGTGCCTGCGCAGTGTGCGGCG
ATCAGAGCTCCGGGAAGCACTACGGCGTGTCCTGCTGCGATGGGTGCTCC
TGCTTTTTCAAGCGGAGCGTGCGGCGCGGGAGCAGCTACGCCTGCATCGC
TCTGGTCGGGAACTGTGTGGTGGACAAGGCGCGGCGGAACTGGTGTCCCT
CCTGCCGCTTCCAGCGATGCCTGGCCGTGGGAATGAACGCTGCTGCGGTT
CAGGAGGAGCGCGGTCCGCGCAACCAGCAGGTGGCTCTCTACCGCACTGG
CCGGAGACAAGCTCCGCCATCTCAGGCGGCGCCATCCCCGACGCCCCACT
CCCAGGCGCTGCACTTCCAGATCCTCGCCCAGATCCTTGTCACGTGCCTG
CGCCAGGCGAAGGCCAACGAGCAGTTCGCTCTGTTGGATCGCTGCCAACA
AGACGCCATCTTTCAGGTGGTGTGGAGCGAGATCTTCGTCCTGCGAGCGT
CCCACTGGTCTCTGGACATCAGCGCCATGATCGACGGCTGCGGCGATGAG
CAGCTCAAACGGCTCATTTGCGAGGCCCACCAGCTAAGGGCCGACGTCCT
GGAACTCAACTTTATGGAGTCCCTAATCCTGTGCAGAAAAGAATTGGCCA
TCAATGCGGAGTATGCCGTTATCCTGGGAAGCCACTCTAAAGCCGCCCTG
ATCTCCTTAGCCCGCTACACCCTGCAGCAATCCAACTACCTGCGGTTCGG
ACAACTGCTCCTTGGTCTGAGGCAGCTGTGCCTGAGGCGCTTCGACTGCG
CGCTTTCTTGTATGTTTCGCAGCGTGGTCAGGGACATCTTAAAAACACTT
TAGAAGCTTTCTAGACCAT

BS32174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hr83-RA 837 CG10296-PA 1..837 17..853 4185 100 Plus
dsf-RB 2076 CG9019-PB 43..120 41..118 195 83.3 Plus
dsf-RA 2076 CG9019-PA 43..120 41..118 195 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hr83-RA 837 CG10296-RA 1..837 17..853 4185 100 Plus
dsf-RB 3537 CG9019-RB 298..375 41..118 195 83.3 Plus
dsf-RA 3042 CG9019-RA 298..375 41..118 195 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6349242..6349867 16..641 3130 100 Plus
3R 32079331 3R 6350299..6350512 640..853 1070 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:25:50 has no hits.

BS32174.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 18:33:11 Download gff for BS32174.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:45 Download gff for BS32174.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:25 Download gff for BS32174.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:25 Download gff for BS32174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6349243..6349867 17..641 100 -> Plus
3R 6350301..6350512 642..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:45 Download gff for BS32174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2174965..2175589 17..641 100 -> Plus
arm_3R 2176023..2176234 642..853 100   Plus

BS32174.pep Sequence

Translation from 16 to 852

> BS32174.pep
MSNFSACAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNC
VVDKARRNWCPSCRFQRCLAVGMNAAAVQEERGPRNQQVALYRTGRRQAP
PSQAAPSPTPHSQALHFQILAQILVTCLRQAKANEQFALLDRCQQDAIFQ
VVWSEIFVLRASHWSLDISAMIDGCGDEQLKRLICEAHQLRADVLELNFM
ESLILCRKELAINAEYAVILGSHSKAALISLARYTLQQSNYLRFGQLLLG
LRQLCLRRFDCALSCMFRSVVRDILKTL*

BS32174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hr83-PA 278 CG10296-PA 1..278 1..278 1457 100 Plus
Hr51-PC 582 CG16801-PC 111..190 7..86 285 65 Plus
tll-PA 452 CG1378-PA 34..125 7..93 270 55.4 Plus
dsf-PB 691 CG9019-PB 13..123 7..116 260 47.8 Plus
dsf-PA 691 CG9019-PA 13..123 7..116 260 47.8 Plus