BS32175.complete Sequence
1073 bp assembled on 2013-04-19
GenBank Submission: KX801362
> BS32175.complete
GAAGTTATCAGTCGACATGGAAGGAAAAGTGTGTCGCACTTGCGGCAAGC
GCACGAATGCTGAAAGATCATTGAATATTTTTGAAAAGCGCAATCAAACT
ACGCTGGAACACATCAAACTACTAACTGGAGCTGTGTTAAAGAACTGTAG
TACGTTGCCAAATCGACTATGTGCGTCCTGCCAAACTTGTTTGCAACAAG
CCATATCCTTTAGGGAACGCTGTTTGGAAGTCCAAAGGGAGTTGCTCCAT
TCCCAAGATGATGAAGACTTCCTTAGAATCTGCCAGGAATCTCCCAAAAG
TGTCCTTGAGCAGGAGGAGTTGGAACTGGATCTGGCAGAAATAAGCATAG
AAGTCGAGCGATTAGACGATCTCAATGAAGGGCCCATTCAAAGCTCCGGT
TTTAAAGTGGAGGACATTCTAAATGAATCTAAAATCAACGAAGACGAGCC
CAATAATGAGGACGATATTGATTATAGTGAAATGGATTACCTTATTTACG
AAAGCGATACTGAAGTAGATGCAAAGCAGGAACTCAAATCAGACTCTGAG
AATCCCAAAAAAAGGAGAAATCGTCGAAATCCCCGCGACTCCAATAGGAC
CTTCTTTTGTGAGGAGTGCGGAAATCACATAAAAGATCGAATATCATTCA
TACTGCATTGTAAGCGACATCGCGGCGTCAAGGAGTTTGGGTGCGAATTC
TGTGAGGATCGCTTCTGCACGCCGGCGGAACTTAAGCGTCACATTCGCAA
GCATACCGGGGAAAAGCCCTTCAAGTGCAGACACTGTTCCCGCAGCTTTT
CTGACTACAGCACTCGGTTGAAGCACGAGCGGACTCACACTAACGAACGA
CCTTTTGTCTGCAAGGAGTGTAACAATGCCTTCACAACATCCTATATTCT
TAAGAACCACATGCTCGTGCATACCGGGGAGAAGGCTTTTAGGTGCGACC
TCTGCGATAAGTTATTCAGTCGCTACACACACCTTACTACCCATTATCGT
TCAAATGCTCACAGACGAAACATGCAGAAAGCAGACACAATCTTTGATAA
ACCCTAAAAGCTTTCTAGACCAT
BS32175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ranshi-RA | 1041 | CG9793-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ranshi-RA | 1159 | CG9793-RA | 34..1077 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8728924..8729484 | 696..136 | 2805 | 100 | Minus |
| 3R | 32079331 | 3R | 8728624..8728871 | 944..697 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 8728449..8728568 | 1060..941 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 8729541..8729660 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:25:55 has no hits.
BS32175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 18:33:18 Download gff for
BS32175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ranshi-RA | 34..1072 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:47 Download gff for
BS32175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ranshi-RA | 34..1072 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:27 Download gff for
BS32175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ranshi-RA | 34..1072 | 17..1055 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:27 Download gff for
BS32175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8728454..8728566 | 943..1055 | 100 | <- | Minus |
| 3R | 8728626..8728871 | 697..942 | 100 | <- | Minus |
| 3R | 8728924..8729483 | 137..696 | 100 | <- | Minus |
| 3R | 8729541..8729660 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:47 Download gff for
BS32175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4554176..4554288 | 943..1055 | 100 | <- | Minus |
| arm_3R | 4554348..4554593 | 697..942 | 100 | <- | Minus |
| arm_3R | 4554646..4555205 | 137..696 | 100 | <- | Minus |
| arm_3R | 4555263..4555382 | 17..136 | 100 | | Minus |
BS32175.pep Sequence
Translation from 16 to 1056
> BS32175.pep
MEGKVCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNR
LCASCQTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQE
ELELDLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDD
IDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEE
CGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEK
PFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHML
VHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTIFDKP*
BS32175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ranshi-PA | 346 | CG9793-PA | 1..346 | 1..346 | 1869 | 100 | Plus |
| M1BP-PA | 418 | CG9797-PA | 13..395 | 6..340 | 758 | 39.8 | Plus |
| CG8159-PB | 399 | CG8159-PB | 5..335 | 5..339 | 646 | 39 | Plus |
| CG11762-PA | 312 | CG11762-PA | 5..309 | 5..338 | 599 | 36.1 | Plus |
| CG18764-PA | 409 | CG18764-PA | 5..402 | 6..342 | 491 | 33.7 | Plus |
