BS32179.complete Sequence
1145 bp assembled on 2013-04-19
GenBank Submission: KX804376
> BS32179.complete
GAAGTTATCAGTCGACATGATCCTGAGCGTCGTGATGCCATTCACCAAGG
CGCGACACTTGCGCGACCAGGTGGCACTGGACTACGCCTACGACGAGGAC
AACTCCGGCCGATCTTCCTCGTCGTCATCGTCATCCTCATCATCGGGTGG
CGACATCCTGCCCGCCTTCGATGTCAATCCGTATCGCGGTCTGGCCGATA
GCTTCGGCGAGGGCAGCTACGACAGTGATATGAGTCTCAGCGAGAGTAGC
TACGAGGAGATCGCCCAGGCGGCCATCCGGGCTGCCAGGCGGGAGATGCG
CCGTCAGAGGACGCGACACGCGCGCAGCCACAACCTGCGACTCTTCTCCG
GCAAATCAGAGATCCCGGAGTGGGAGAACCCGTGCGGAGGCACCTACACG
CCCGACGAGAGCCTCAGCGATAGCAGCGCCAGCCAAGGACGAGTTATCAA
GCGCAAGCACCTCGAAAACTTGCGGAACATCACGATGAGCGAATACCAAG
ATATAACCCACCGCGCCACCCTGGAGTACGGCAATCTGCAGCACTGGCAG
CGCGAGTACAAGTTCCTGCCGAACATGACGAGGCCCACAAGTGCGGTGAA
GCTAAAGACTTGGTACCGCCACATGCAGACCTTCGTGGGCAGCTTCTCAT
ATCTGGGACGGGCGCAGTACAAGTTCCGCAAGGATCAGCAGAAGAGCCTC
AACGAGGCGGTCACCAAGGAGCTGCACGACCTGCTGGTCAGCGCGCGCTA
TATGCTCTGCGAGATCGAGTTGACCATAAACGCCTCCTATCCGAACAGCA
ATGGTGCGAAGCTGAGCCGCGTTAGCCGGCAGGCGATGGAGGAGCGTCTC
AACTTTCACACGCCCGCCAACGGATCCATGGAGGCGGACCAGCGCGACCT
GAAGGTCAGCAAGGAGCTGTACTTCCAGTATCTGAACAACGTGTGGAAGA
CCCTGCACCGTGTCCTGCGGCGACCGCGACGCAATAGTGCCGAGCGGCGA
CACCTGGCGGCGATTCACGGAACTGGTGCGAGCGGCCTGCGGGCGGGCAG
CTCGGAAATGCTCGACGTGGGCTCCTCGAACGGATCCGGTGGCAGTTCCG
GCTCCGATGGCGGATCCAATGAGTCTTGAAAGCTTTCTAGACCAT
BS32179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-RB | 1113 | CG5988-PB | 1..1113 | 17..1129 | 5535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-RB | 1980 | CG5988-RB | 173..1286 | 16..1129 | 5540 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18241348..18241882 | 1129..595 | 2645 | 99.6 | Minus |
| X | 23542271 | X | 18242565..18243006 | 457..16 | 2210 | 100 | Minus |
| X | 23542271 | X | 18242078..18242219 | 597..456 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:26:11 has no hits.
BS32179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 18:34:41 Download gff for
BS32179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 1..1112 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:53 Download gff for
BS32179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 174..1285 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:32 Download gff for
BS32179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| upd2-RB | 174..1285 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:32 Download gff for
BS32179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18241349..18241881 | 596..1128 | 99 | <- | Minus |
| X | 18242080..18242217 | 458..595 | 100 | <- | Minus |
| X | 18242565..18243005 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:53 Download gff for
BS32179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18136113..18136250 | 458..595 | 100 | <- | Minus |
| arm_X | 18135382..18135914 | 596..1128 | 99 | <- | Minus |
| arm_X | 18136598..18137038 | 17..457 | 100 | | Minus |
BS32179.pep Sequence
Translation from 16 to 1128
> BS32179.pep
MILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDILPA
FDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTR
HARSHNLRLFSGKSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKHLE
NLRNITMSEYQDITHRATLEYGNLQHWQREYKFLPNMTRPTSAVKLKTWY
RHMQTFVGSFSYLGRAQYKFRKDQQKSLNEAVTKELHDLLVSARYMLCEI
ELTINASYPNSNGAKLSRVSRQAMEERLNFHTPANGSMEADQRDLKVSKE
LYFQYLNNVWKTLHRVLRRPRRNSAERRHLAAIHGTGASGLRAGSSEMLD
VGSSNGSGGSSGSDGGSNES*
BS32179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| upd2-PB | 370 | CG5988-PB | 1..370 | 1..370 | 1909 | 100 | Plus |
| os-PC | 413 | CG5993-PC | 51..338 | 75..328 | 281 | 29.1 | Plus |
| os-PB | 413 | CG5993-PB | 51..338 | 75..328 | 281 | 29.1 | Plus |
| os-PA | 413 | CG5993-PA | 51..338 | 75..328 | 281 | 29.1 | Plus |
