BS32180.complete Sequence
1010 bp assembled on 2013-04-24
GenBank Submission: KX804006
> BS32180.complete
GAAGTTATCAGTCGACATGTTTTTTGCTCTTCACATTGGTTATATCATGC
TGGGGATAGTGTTTCTTACGTTGTTGGCCGGCAGCTCTGCCGAACTGGGC
TACCAGTATCAGCAAAACAGTTATGGAGGACCTGTGAATAGCTATGGAAA
CGAAGCAGTTTTGGGTGATGAACGATACCACAGTCAACCGGGAAATCATT
ACCAGGAGAACGCAGACTTTCACAAGCACTTTTACGCCTTCGAGGCTCCT
TACGATTCCGTGGAGGAGGTGGATTTAGCGGAAACTAAGTTATCATCCCT
TGCCCAGAAAAACCTGCAAGTGGTGTTTATCAAGGCTCCGGAAAATAAGG
CGGTGGTGGGTGCTCTAAACGCCTTGGCGAAGCAAACCAGTGAGGATAAG
ACGGCCATCTACGTGCTCAACAAACAGACGGATGTCAATGAGCTGGCAAG
CCAACTTAGTGCCCTTAAGGCACACCACAAACATAAGCCGCAGGTTCATT
TCGTTAAGTACAAGACGGAGGAGGAAGCTGCTCAGGCCCAACAATATATT
CAGGCCCAATACGGCGGAGGATCTTCGATTCCCCAGCCGGGAAAAGCATC
CTCCTTGGGATATTACCCTGAGCAGCAGCCACAGTATGAGCAGGATGCCC
CATCTGAAGAGTATCCAGCTGGCCAAGTAGGTTATCTGCCATCCCCTCAA
CAGTCCGCCTATCAGCCGCAGTCCGGATATCTGCCACCCTTGCCCAGTTA
CTCCTCCATTTCACAGGGCTACAATGCTGCTGGATCTTCAGCTGGAGTTT
CCACCATTGGACAGATTGATCTGCCACCTGTTCCCGAGGCTCAGCAGGAT
CTAACCGGAAACTATAATAATGCCGGTGTGGACTACCGCTCTGCGAGATC
AAGGCGCGTTGACTTTCGGGCCAACGAGCGACATAGGCGTGGAAGCAGGA
TGGTCTTTCCCTCGGCCAACCCTGGGAAACGACTGCGGCTCTGAAAGCTT
TCTAGACCAT
BS32180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlR-RA | 978 | CG31081-PA | 1..978 | 17..994 | 4875 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlR-RA | 1059 | CG31081-RA | 1..979 | 17..995 | 4880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26634984..26635918 | 61..995 | 4660 | 99.9 | Plus |
| 3R | 32079331 | 3R | 26634885..26634929 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:32:59 has no hits.
BS32180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-24 14:19:17 Download gff for
BS32180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlR-RA | 21..988 | 26..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:58 Download gff for
BS32180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlR-RA | 10..977 | 26..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:22 Download gff for
BS32180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlR-RA | 10..977 | 26..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:22 Download gff for
BS32180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26634894..26634929 | 26..61 | 100 | -> | Plus |
| 3R | 26634985..26635916 | 62..993 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:58 Download gff for
BS32180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22460616..22460651 | 26..61 | 100 | -> | Plus |
| arm_3R | 22460707..22461638 | 62..993 | 99 | | Plus |
BS32180.pep Sequence
Translation from 16 to 993
> BS32180.pep
MFFALHIGYIMLGIVFLTLLAGSSAELGYQYQQNSYGGPVNSYGNEAVLG
DERYHSQPGNHYQENADFHKHFYAFEAPYDSVEEVDLAETKLSSLAQKNL
QVVFIKAPENKAVVGALNALAKQTSEDKTAIYVLNKQTDVNELASQLSAL
KAHHKHKPQVHFVKYKTEEEAAQAQQYIQAQYGGGSSIPQPGKASSLGYY
PEQQPQYEQDAPSEEYPAGQVGYLPSPQQSAYQPQSGYLPPLPSYSSISQ
GYNAAGSSAGVSTIGQIDLPPVPEAQQDLTGNYNNAGVDYRSARSRRVDF
RANERHRRGSRMVFPSANPGKRLRL*
BS32180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlR-PA | 325 | CG31081-PA | 1..325 | 1..325 | 1692 | 100 | Plus |
| TwdlP-PA | 220 | CG14240-PA | 1..211 | 11..240 | 331 | 37.3 | Plus |
| TwdlJ-PB | 274 | CG5471-PB | 79..262 | 60..247 | 325 | 39.8 | Plus |
| TwdlO-PA | 229 | CG6452-PA | 31..220 | 40..226 | 315 | 39.1 | Plus |
| Tb-PA | 283 | CG5480-PA | 80..278 | 60..240 | 312 | 38.9 | Plus |
