BS32196.complete Sequence
530 bp assembled on 2013-04-19
GenBank Submission: KX802768
> BS32196.complete
GAAGTTATCAGTCGACATGTCCAGCTTCAAGAAGTTATCCCTGTGCCTAG
TGCTTTCTATCATGTGGACCTCGGTTGCAGACAGCACGCCAATTAGACAA
TGTGCCGACAGCAACTATCCTCAGCCACTGATGGTGCAAATCGACGATTG
TGACGCATTGCCCTGCGATTTGTGGAAGGGAACCGAGGCCAAAATCGACA
TCCAATTTGTTGCCACTCGCAATACCATGAAGAAGCTATCAGCCGAAGTG
CATCTGACCTCGCTGGGAGTGACCATACCCTATGACCTAGAAGCCTCCCG
TGGCAATGTGTGCAGCAATCTGCTCCATGGCGCCTACTGTCCCCTGGATG
CTGGCGAGGATGTGACCTACCAGCTGCTCCTGCCAGTCACCACCAACCAG
CCGGAGGTGCCCACGCGCCTAGAAGTTCGTCTGCTGGACTCCGATGACGA
GAATCGAGTGGTGTCCTGTTTCCTGGCCGACACTCGGGTCAAGAAGCCCA
GATCGGCAGTTTAGAAGCTTTCTAGACCAT
BS32196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2c-RA | 498 | CG3934-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2c-RA | 708 | CG3934-RA | 46..544 | 17..515 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10060673..10060972 | 216..515 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 10060445..10060558 | 102..215 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 10060297..10060384 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:18:02 has no hits.
BS32196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 17:02:49 Download gff for
BS32196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2c-RA | 1..498 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:52 Download gff for
BS32196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2c-RA | 46..543 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:38 Download gff for
BS32196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2c-RA | 46..543 | 17..514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:38 Download gff for
BS32196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10060297..10060381 | 17..101 | 100 | -> | Plus |
| 3R | 10060445..10060558 | 102..215 | 100 | -> | Plus |
| 3R | 10060673..10060971 | 216..514 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:52 Download gff for
BS32196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5886019..5886103 | 17..101 | 100 | -> | Plus |
| arm_3R | 5886167..5886280 | 102..215 | 100 | -> | Plus |
| arm_3R | 5886395..5886693 | 216..514 | 100 | | Plus |
BS32196.pep Sequence
Translation from 16 to 513
> BS32196.pep
MSSFKKLSLCLVLSIMWTSVADSTPIRQCADSNYPQPLMVQIDDCDALPC
DLWKGTEAKIDIQFVATRNTMKKLSAEVHLTSLGVTIPYDLEASRGNVCS
NLLHGAYCPLDAGEDVTYQLLLPVTTNQPEVPTRLEVRLLDSDDENRVVS
CFLADTRVKKPRSAV*
BS32196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2c-PA | 165 | CG3934-PA | 1..165 | 1..165 | 860 | 100 | Plus |
| Npc2e-PB | 168 | CG31410-PB | 2..154 | 7..164 | 265 | 35.4 | Plus |
| Npc2d-PA | 173 | CG12813-PA | 9..159 | 7..160 | 245 | 37.8 | Plus |
