BS32224.complete Sequence
881 bp assembled on 2013-04-19
GenBank Submission: KX800710
> BS32224.complete
GAAGTTATCAGTCGACATGCGTCTACCTATACGGCAGCTTGTGATAGTAG
CCTGTCTTTTTATTGGGATTATCCGGACGGAATCCGGACGCTTACTGGAA
AACGACTGTGGAACCACGAGCAGTAATGGTTATAGAGCGCGAATCGATGG
AGGTAGAGATGCTGGCATGGAATCGAACCCCTGGATGGTCAGAGTAATGA
TTTCGGGAAAAGCAGTGTGTGGCGGTTCACTTATAACTGCTCGATTTGTT
TTGACCGCCGAGCATTGCATTTCCCCAATGTATATGAATGTGCGCCTGGG
CGAATACGATACCCGACATCCCATATTCGACTGCGATGATTTTGTCTGCA
CACCAAGGGCCTACAATGTGGACGTGGATAGGAAAATTGTTCATAGTAAT
CCAGGATATGATATTGGTCTGTTGCGAATGCAAAGGAGTGTGATATTCTC
AAACTATGTCAGACCAATCTGCTTGATTCTGGGCAAAACGTTGGGTGGGA
ACCCACTCTCAATATTACGCTTCAATTTCACCGGATGGGGTACAAATAGT
GATGGAGAAGAGCAAGATAGGCTACAGACTGCCACCCTGCAACAATTACC
TCAATGGAGTTGTGAAAGACCTGGAAGACCTCTCGATATATCCTATATAT
GTGCCGGCAGTTATATCAGTGATTCGTGCAAAGGCGATTCGGGAGGTCCT
TTGAGCGCAATTCGTACATTTGAGGGGCAGGGAAGGGTCTTCCAGTTCGG
TGTCGCTAGCCAAGGACTTCGGTTGTGCAGTGGCTTGGGAATTTACACCA
ATGTCACACACTTTACGGACTGGATATTGGATGTTATTCAAAACCATTCA
GACGACTTTGAATGAAAGCTTTCTAGACCAT
BS32224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30288-RC | 849 | CG30288-PC | 1..849 | 17..865 | 4230 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30288-RC | 965 | CG30288-RC | 25..873 | 17..865 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21519335..21519747 | 865..453 | 2065 | 100 | Minus |
| 2R | 25286936 | 2R | 21520143..21520369 | 243..17 | 1120 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21519815..21519981 | 452..286 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 21520038..21520081 | 286..243 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:17:39 has no hits.
BS32224.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 16:58:35 Download gff for
BS32224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30288-RC | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:41 Download gff for
BS32224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30288-RC | 25..872 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:27 Download gff for
BS32224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30288-RC | 25..872 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:27 Download gff for
BS32224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21519336..21519747 | 453..864 | 100 | <- | Minus |
| 2R | 21519815..21519981 | 286..452 | 100 | <- | Minus |
| 2R | 21520039..21520081 | 243..285 | 100 | <- | Minus |
| 2R | 21520144..21520369 | 17..242 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:41 Download gff for
BS32224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17406841..17407252 | 453..864 | 100 | <- | Minus |
| arm_2R | 17407320..17407486 | 286..452 | 100 | <- | Minus |
| arm_2R | 17407544..17407586 | 243..285 | 100 | <- | Minus |
| arm_2R | 17407649..17407874 | 17..242 | 99 | | Minus |
BS32224.pep Sequence
Translation from 16 to 864
> BS32224.pep
MRLPIRQLVIVACLFIGIIRTESGRLLENDCGTTSSNGYRARIDGGRDAG
MESNPWMVRVMISGKAVCGGSLITARFVLTAEHCISPMYMNVRLGEYDTR
HPIFDCDDFVCTPRAYNVDVDRKIVHSNPGYDIGLLRMQRSVIFSNYVRP
ICLILGKTLGGNPLSILRFNFTGWGTNSDGEEQDRLQTATLQQLPQWSCE
RPGRPLDISYICAGSYISDSCKGDSGGPLSAIRTFEGQGRVFQFGVASQG
LRLCSGLGIYTNVTHFTDWILDVIQNHSDDFE*
BS32224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30288-PC | 282 | CG30288-PC | 1..282 | 1..282 | 1511 | 100 | Plus |
| CG30414-PC | 305 | CG30414-PC | 23..302 | 24..282 | 571 | 44.6 | Plus |
| CG30414-PB | 305 | CG30414-PB | 23..302 | 24..282 | 571 | 44.6 | Plus |
| CG33225-PB | 292 | CG33225-PB | 1..284 | 1..280 | 514 | 39.6 | Plus |
| CG33225-PC | 307 | CG33225-PC | 20..299 | 5..280 | 509 | 39.8 | Plus |
