BS32254.complete Sequence
980 bp assembled on 2013-04-19
GenBank Submission: KX804264
> BS32254.complete
GAAGTTATCAGTCGACATGCGATCCATAGATCCCGTATCCCAAATGGCAA
ACGCCACTTTGGCGGACGACGATCTGGGTAACTATGACGTTTGCCTCGAG
GATTTGCAACTGTTTGCCCAACTGGAGGATCTCTCCGGAGAAAGATTGCC
AATGGAGATGGAGCTGCTGAATCCGGGCTCGGAATACGATCTATTGGAAC
TTGTGAATGGGGCTCTCCAGCAGCGAAACACCACGGAACATAAGCCAACA
GACATGTGCAAGCCCAAGCGGACACCAACCACTAAACGCCACCGAACAAC
TGGCAAGGATCACACCTGCGACATATGCGACAGAAGATTCTCGGAAGCCT
ACAATCTGCGCATCCACAAGATGACGCACACGGACGAGAAGCCGCATGTG
TGCGTGGAGTGCGGCAAGGGATTCCGGCAACTGAACAAGCTACGCATCCA
TGCAGTGACCCACACGGCGGAGCGGCCACACAAATGTGATATCTGCGGCA
AGGGTTTCCGGTATGCCAACTACCTAACTGTCCATCGACGCTTGCACACG
GGAGAGAAACCATATCCATGTTTGGCCACCGACTGTCATCTCTCCTTTCA
TTCCATCCACGCGCGGCGCATTCACACAAAGCTAAGGCATGCGGCACAAA
CGGATCCGGATCCCGAACATCCGCTGGCGGAGCAAGAGCAACGGGATACA
TCTGCGCTCAGCTTCACCTGCCCGGTTTGCAGCCGGGTCCTAACGGATCA
GTGCTATCTTAGCATCCACCTGAAGCGGCACTACAATCAGCGCGACTTCC
CATGCCCACAGCCGGAGTGCGGCAAGAGATTCTTTAGTGCCTCGGAGCTG
AAGCACCACCAGATTGCCCACACCCAGCAGCGACCATTTGCCTGTCCACT
CTGTCCAGCACGATTTCTGCGCAAATCCAATCATAAGCAACACCTCAAGG
TGCACGAGCGTTGAAAGCTTTCTAGACCAT
BS32254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2120-RB | 948 | CG2120-PB | 1..948 | 17..964 | 4725 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2120-RB | 1155 | CG2120-RB | 48..1001 | 16..969 | 4740 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8136134..8136892 | 211..969 | 3765 | 99.7 | Plus |
| X | 23542271 | X | 8135871..8136067 | 16..212 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:17:51 has no hits.
BS32254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 16:59:44 Download gff for
BS32254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2120-RB | 549..1495 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:47 Download gff for
BS32254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2120-RB | 49..995 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:33 Download gff for
BS32254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2120-RB | 49..995 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:33 Download gff for
BS32254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8135872..8136066 | 17..211 | 100 | -> | Plus |
| X | 8136135..8136886 | 212..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:47 Download gff for
BS32254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8029905..8030099 | 17..211 | 100 | -> | Plus |
| arm_X | 8030168..8030919 | 212..963 | 99 | | Plus |
BS32254.pep Sequence
Translation from 16 to 963
> BS32254.pep
MRSIDPVSQMANATLADDDLGNYDVCLEDLQLFAQLEDLSGERLPMEMEL
LNPGSEYDLLELVNGALQQRNTTEHKPTDMCKPKRTPTTKRHRTTGKDHT
CDICDRRFSEAYNLRIHKMTHTDEKPHVCVECGKGFRQLNKLRIHAVTHT
AERPHKCDICGKGFRYANYLTVHRRLHTGEKPYPCLATDCHLSFHSIHAR
RIHTKLRHAAQTDPDPEHPLAEQEQRDTSALSFTCPVCSRVLTDQCYLSI
HLKRHYNQRDFPCPQPECGKRFFSASELKHHQIAHTQQRPFACPLCPARF
LRKSNHKQHLKVHER*
BS32254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2120-PB | 315 | CG2120-PB | 1..315 | 1..315 | 1743 | 100 | Plus |
| CG32772-PE | 520 | CG32772-PE | 129..325 | 97..314 | 332 | 33.3 | Plus |
| CG32772-PC | 520 | CG32772-PC | 129..325 | 97..314 | 332 | 33.3 | Plus |
| Meics-PB | 571 | CG8474-PB | 251..450 | 90..313 | 328 | 32.6 | Plus |
| Meics-PA | 583 | CG8474-PA | 263..462 | 90..313 | 328 | 32.6 | Plus |
| Meics-PB | 571 | CG8474-PB | 301..509 | 87..314 | 320 | 30 | Plus |
| Meics-PB | 571 | CG8474-PB | 229..422 | 128..313 | 264 | 31.1 | Plus |
| CG32772-PE | 520 | CG32772-PE | 151..378 | 91..310 | 256 | 30.3 | Plus |
| CG32772-PC | 520 | CG32772-PC | 151..378 | 91..310 | 256 | 30.3 | Plus |
