BS32302.complete Sequence
578 bp assembled on 2013-05-22
> BS32302.complete
GAAGTTATCAGTCGACATGTCAGTCGCTGACACCATTGAATACGTGACCC
TGGGCAATCCTGTCAGCAAGATGGTAGCCTCGTCCGCATCCGCCCTGCTC
CGCACGCTTGGTCTGCGTCCCAAGAAGGTGCCGGTGCAGGAGACGAGTAT
GGCGGTGCTCCCTGCCGCCCACAGCTACGCGCATTCACACGGATCACTCT
ATCGACTGGCCGGCTGCCATTACCACTTCATTCGGCTGGCCGGGATCGTC
GGCGCGTCGGCCATCTTTATGGGCGCCTACTGCAAGTACGTCCTGAAGGA
CGTCAGCGATCCCAAGGAGCAGGTGGACTCGCAGGCCTTTGCTGATGTGG
CCAATCGCATCCACTTTCTGCACTCCTTTGCCATGATGGCCATGCCTCTG
GCCCACTATCCCGTATTCACTGGCACTTTGATGATTACGGGCATGATGCT
TTTCAGCGGCTGCATGTACTACCGCGCTTTGACTGGCGAGAAGCGTCTGC
AACCGTACGCGACCGTCGGAGGATTCTGCCTGATGGCCGCGTGGCTGTCG
CTGGTCCTGTAGAAGCTTTCTAGACCAT
BS32302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4686-RB | 546 | CG4686-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG4686-RA | 546 | CG4686-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG42395-RD | 540 | CG42395-PD | 159..540 | 181..562 | 680 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4686-RB | 933 | CG4686-RB | 76..621 | 17..562 | 2730 | 100 | Plus |
CG4686-RA | 1195 | CG4686-RA | 338..883 | 17..562 | 2730 | 100 | Plus |
CG4562-RC | 6512 | CG4562-RC | 5372..5515 | 562..419 | 720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19864989..19865297 | 110..418 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 19866414..19866557 | 419..562 | 720 | 100 | Plus |
X | 23542271 | X | 9575320..9575704 | 565..181 | 695 | 78.7 | Minus |
3R | 32079331 | 3R | 19864833..19864926 | 17..110 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 2771..2887 | 559..446 | 117 | 60.2 | Minus |
BS32302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:11 Download gff for
BS32302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4686-RA | 377..922 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:46 Download gff for
BS32302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4686-RA | 338..883 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:33 Download gff for
BS32302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4686-RA | 338..883 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:33 Download gff for
BS32302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19864989..19865297 | 110..418 | 100 | -> | Plus |
3R | 19866414..19866557 | 419..562 | 100 | | Plus |
3R | 19864833..19864925 | 17..109 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:46 Download gff for
BS32302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15690555..15690647 | 17..109 | 100 | -> | Plus |
arm_3R | 15690711..15691019 | 110..418 | 100 | -> | Plus |
arm_3R | 15692136..15692279 | 419..562 | 100 | | Plus |
BS32302.pep Sequence
Translation from 16 to 561
> BS32302.pep
MSVADTIEYVTLGNPVSKMVASSASALLRTLGLRPKKVPVQETSMAVLPA
AHSYAHSHGSLYRLAGCHYHFIRLAGIVGASAIFMGAYCKYVLKDVSDPK
EQVDSQAFADVANRIHFLHSFAMMAMPLAHYPVFTGTLMITGMMLFSGCM
YYRALTGEKRLQPYATVGGFCLMAAWLSLVL*
BS32302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4686-PB | 181 | CG4686-PB | 1..181 | 1..181 | 936 | 100 | Plus |
CG4686-PA | 181 | CG4686-PA | 1..181 | 1..181 | 936 | 100 | Plus |
CG42395-PD | 179 | CG42395-PD | 1..179 | 3..181 | 673 | 69.8 | Plus |