Clone BS32302 Report

Search the DGRC for BS32302

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:323
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG4686-RA
Protein status:BS32302.pep: gold
Sequenced Size:578

Clone Sequence Records

BS32302.complete Sequence

578 bp assembled on 2013-05-22

> BS32302.complete
GAAGTTATCAGTCGACATGTCAGTCGCTGACACCATTGAATACGTGACCC
TGGGCAATCCTGTCAGCAAGATGGTAGCCTCGTCCGCATCCGCCCTGCTC
CGCACGCTTGGTCTGCGTCCCAAGAAGGTGCCGGTGCAGGAGACGAGTAT
GGCGGTGCTCCCTGCCGCCCACAGCTACGCGCATTCACACGGATCACTCT
ATCGACTGGCCGGCTGCCATTACCACTTCATTCGGCTGGCCGGGATCGTC
GGCGCGTCGGCCATCTTTATGGGCGCCTACTGCAAGTACGTCCTGAAGGA
CGTCAGCGATCCCAAGGAGCAGGTGGACTCGCAGGCCTTTGCTGATGTGG
CCAATCGCATCCACTTTCTGCACTCCTTTGCCATGATGGCCATGCCTCTG
GCCCACTATCCCGTATTCACTGGCACTTTGATGATTACGGGCATGATGCT
TTTCAGCGGCTGCATGTACTACCGCGCTTTGACTGGCGAGAAGCGTCTGC
AACCGTACGCGACCGTCGGAGGATTCTGCCTGATGGCCGCGTGGCTGTCG
CTGGTCCTGTAGAAGCTTTCTAGACCAT

BS32302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4686-RB 546 CG4686-PB 1..546 17..562 2730 100 Plus
CG4686-RA 546 CG4686-PA 1..546 17..562 2730 100 Plus
CG42395-RD 540 CG42395-PD 159..540 181..562 680 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4686-RB 933 CG4686-RB 76..621 17..562 2730 100 Plus
CG4686-RA 1195 CG4686-RA 338..883 17..562 2730 100 Plus
CG4562-RC 6512 CG4562-RC 5372..5515 562..419 720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19864989..19865297 110..418 1545 100 Plus
3R 32079331 3R 19866414..19866557 419..562 720 100 Plus
X 23542271 X 9575320..9575704 565..181 695 78.7 Minus
3R 32079331 3R 19864833..19864926 17..110 470 100 Plus
Blast to na_te.dros performed 2014-11-28 13:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 2771..2887 559..446 117 60.2 Minus

BS32302.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:11 Download gff for BS32302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4686-RA 377..922 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:46 Download gff for BS32302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4686-RA 338..883 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:33 Download gff for BS32302.complete
Subject Subject Range Query Range Percent Splice Strand
CG4686-RA 338..883 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:33 Download gff for BS32302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19864989..19865297 110..418 100 -> Plus
3R 19866414..19866557 419..562 100   Plus
3R 19864833..19864925 17..109 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:46 Download gff for BS32302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15690555..15690647 17..109 100 -> Plus
arm_3R 15690711..15691019 110..418 100 -> Plus
arm_3R 15692136..15692279 419..562 100   Plus

BS32302.pep Sequence

Translation from 16 to 561

> BS32302.pep
MSVADTIEYVTLGNPVSKMVASSASALLRTLGLRPKKVPVQETSMAVLPA
AHSYAHSHGSLYRLAGCHYHFIRLAGIVGASAIFMGAYCKYVLKDVSDPK
EQVDSQAFADVANRIHFLHSFAMMAMPLAHYPVFTGTLMITGMMLFSGCM
YYRALTGEKRLQPYATVGGFCLMAAWLSLVL*

BS32302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4686-PB 181 CG4686-PB 1..181 1..181 936 100 Plus
CG4686-PA 181 CG4686-PA 1..181 1..181 936 100 Plus
CG42395-PD 179 CG42395-PD 1..179 3..181 673 69.8 Plus