BS32303.complete Sequence
1697 bp assembled on 2013-09-16
> BS32303.complete
GAAGTTATCAGTCGACATGGGAAAAGATAATCAGATAAGTGTCATTTATG
CCCCTTTGCAGGCTAACAAACTCAAGGACAACACACCACCGTACGATGCA
CCGCCGCCCACGCCGATCAGCAAGGTCCTGAACATCACCGGCACTCCGAT
CGTTCGCAAGGAGAAGCGCCAGACCAGCGCCCGGTACAATGCCTCCAAGA
ACTGCGAACTGACGGCCCTCATTCCGCTAAACGAGAAGACCGCCGCCAGT
GAACGTGAGGAGCTGTTCATACAGAAGATCCAGCAATGCTGCACACTGTT
CGACTTCTCCGAGCCGCTCAGCGACCTCAAGTTCAAGGAGGTGAAGCGGG
CGGCTCTGCACGAAATGGTCGATTTCCTCACCAACCAAAATGGCGTAATA
ACCGAAGTTATTTACCCGGAGGCGATCAATATGTTTGCTGTCAACCTTTT
CCGAACTCTGCCGCCATCGTCCAACCCGAATGGTGCCGAATTCGATCCGG
AGGAGGATGAGCCCACGTTGGAGTCCTCGTGGCCGCATCTGCAACTCGTT
TACGAGCTGTTCTTGCGCTTCTTGGAGTCACCAGATTTTCAACCAAGCAT
GGCAAAACGTTTTATCGACCATCAATTTGTATTACAACTATTGGATTTAT
TCGATTCGGAGGATCCACGTGAACGTGATTTCCTGAAGACTGTTTTACAT
CGCATCTATGGAAAATTTTTGGGCTTGAGAGCATTTATTAGAAAGCAGAT
CAACAATGTCTTTTACAGATTTATTTATGAAACGGAGCATCATAATGGCA
TAGCCGAATTGTTGGAAATCCTGGGTAGCATTATCAATGGCTTTGCTCTG
CCGCTTAAGGAGGAGCATAAACAATTTTTACTTAAGGTATTGCTGCCATT
GCACAAAGCCAAGAGCCTCTCGGTCTACCATCCGCAGCTCACCTATTGTG
TGGTGCAGTTCCTGGAGAAGGATCCTAGCTTATCGGAGGCGGTCATCAAA
AGCCTACTTAAATTTTGGCCCAAGACGCACAGTCCCAAGGAGGTTATGTT
TTTGAACGAGCTGGAGGAGCTGTTGGACGTAATTGAGCCGGCCGAGTTCC
AGAAGGTGATGGTGCCGCTGTTCCGCCAAATAGCCAAGTGCGTCTCTTCG
CCTCATTTCCAGGTGGCCGAGCGTGCGTTGTACTATTGGAACAACGAGTA
CATTATGTCGCTGATAACGGATAACTCGGCGGTGATATTACCCATTATGT
TCCCAGCGCTCAATCGCAACTCAAAGACGCACTGGAACAAGACCATCCAT
GGTCTGATCTACAATGCACTCAAGCTGTTCATGGAGATAGATCAGCGGCT
TTTCGACGAGTGCAGCAAGAACTACAAGCAAGAGAAGCAGATGGAGCGTG
AGAAGCTGTCGCAAAGGGAGGAGCTCTGGCAACAGGTGGAGAGCTTGGCC
AAGACCAACCCGGAGTGGACAAAGGCGCGCCGGTTTAACGACTGCCTGCC
GGTCAGCGACAGCCGGGCCCTGTGCGATCAATATAGTGAGAACAGCGATT
CAGCGTATGATCAGAGCGAGCAGAGGGCGCGCCAGCCGCCGCCTCCGCTG
CCGCCACAGAAACAGGCGCACCAGGAGCCCCGAGAGGTGAGACAGGCACT
TGCCACATTAACAACACTAAACAACTACTAAAAGCTTTCTAGACCAT
BS32303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RC | 1665 | CG7913-PC | 1..1665 | 17..1681 | 8280 | 99.8 | Plus |
| PP2A-B'-RP | 2052 | CG7913-PP | 431..2052 | 60..1681 | 8065 | 99.8 | Plus |
| PP2A-B'-RN | 2013 | CG7913-PN | 393..2013 | 61..1681 | 8060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RC | 1823 | CG7913-RC | 8..1675 | 14..1681 | 8295 | 99.8 | Plus |
| PP2A-B'-RP | 2870 | CG7913-RP | 1101..2722 | 60..1681 | 8065 | 99.8 | Plus |
| PP2A-B'-RN | 2727 | CG7913-RN | 959..2579 | 61..1681 | 8060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18176307..18176700 | 1000..1393 | 1940 | 99.5 | Plus |
| 3R | 32079331 | 3R | 18175602..18175937 | 433..768 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 18176805..18177093 | 1393..1681 | 1445 | 100 | Plus |
| 3R | 32079331 | 3R | 18176002..18176234 | 767..999 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 18171481..18171703 | 14..236 | 1100 | 99.6 | Plus |
| 3R | 32079331 | 3R | 18175333..18175529 | 237..433 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 27566644..27566783 | 789..650 | 205 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:47:05 has no hits.
BS32303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:08 Download gff for
BS32303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RC | 11..1673 | 17..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:01 Download gff for
BS32303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RC | 11..1673 | 17..1679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:01 Download gff for
BS32303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18176004..18176234 | 769..999 | 100 | -> | Plus |
| 3R | 18171484..18171703 | 17..236 | 99 | -> | Plus |
| 3R | 18175333..18175529 | 237..433 | 100 | -> | Plus |
| 3R | 18175603..18175937 | 434..768 | 100 | -> | Plus |
| 3R | 18176307..18176699 | 1000..1392 | 99 | -> | Plus |
| 3R | 18176805..18177091 | 1393..1679 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:08 Download gff for
BS32303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13997206..13997425 | 17..236 | 99 | -> | Plus |
| arm_3R | 14001055..14001251 | 237..433 | 100 | -> | Plus |
| arm_3R | 14001325..14001659 | 434..768 | 100 | -> | Plus |
| arm_3R | 14001726..14001956 | 769..999 | 100 | -> | Plus |
| arm_3R | 14002029..14002421 | 1000..1392 | 99 | -> | Plus |
| arm_3R | 14002527..14002813 | 1393..1679 | 100 | | Plus |
BS32303.pep Sequence
Translation from 16 to 1680
> BS32303.pep
MGKDNQISVIYAPLQANKLKDNTPPYDAPPPTPISKVLNITGTPIVRKEK
RQTSARYNASKNCELTALIPLNEKTAASEREELFIQKIQQCCTLFDFSEP
LSDLKFKEVKRAALHEMVDFLTNQNGVITEVIYPEAINMFAVNLFRTLPP
SSNPNGAEFDPEEDEPTLESSWPHLQLVYELFLRFLESPDFQPSMAKRFI
DHQFVLQLLDLFDSEDPRERDFLKTVLHRIYGKFLGLRAFIRKQINNVFY
RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKQFLLKVLLPLHKAKS
LSVYHPQLTYCVVQFLEKDPSLSEAVIKSLLKFWPKTHSPKEVMFLNELE
ELLDVIEPAEFQKVMVPLFRQIAKCVSSPHFQVAERALYYWNNEYIMSLI
TDNSAVILPIMFPALNRNSKTHWNKTIHGLIYNALKLFMEIDQRLFDECS
KNYKQEKQMEREKLSQREELWQQVESLAKTNPEWTKARRFNDCLPVSDSR
ALCDQYSENSDSAYDQSEQRARQPPPPLPPQKQAHQEPREVRQALATLTT
LNNY*
BS32303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-PC | 554 | CG7913-PC | 1..554 | 1..554 | 2900 | 100 | Plus |
| PP2A-B'-PP | 683 | CG7913-PP | 140..683 | 11..554 | 2829 | 99.3 | Plus |
| PP2A-B'-PN | 670 | CG7913-PN | 132..670 | 16..554 | 2824 | 100 | Plus |
| PP2A-B'-PM | 670 | CG7913-PM | 132..670 | 16..554 | 2824 | 100 | Plus |
| PP2A-B'-PL | 670 | CG7913-PL | 132..670 | 16..554 | 2824 | 100 | Plus |
