BS32306.complete Sequence
1748 bp assembled on 2013-10-22
> BS32306.complete
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCACTGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCA
ATGGTGGCGATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGC
TCCGAAGTGCTTCGCTATCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGC
CACTATCAAAACACAGCAGTATGCGCAGGAAGAGAAGTCGATTCGCGAGG
AAAACGCTCGCCTTCAGCGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAA
GCCCTATGCCGGCACCTCTCCGAATCGGAATCCTCGCTGGAGATGGACGA
GGAACGCTTCTACAACGAGAACCTGATGGGAGGCGGTTCGTTCGCTGTAG
CGACGGCAGCAGCCGCCGCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAA
CGCACCATCAGCAGTCCCGTCTCCCACAGTCCCTCGAGTAGCCGACCTCT
AAGTCCGGGCACGGCGGTGCAAAACCGCTGCTATGCCTGCGGCCAGCTAG
TGAATCGTCGTGCCAGCGAACGCTTCATCAAGCCAGCACTCCCAACGCCC
ATGCTGGGCCTGAACACTTCCGCACCGAACGTGCTGACCTCAACCAACCC
ACTGCTGGGCATTTTGGGAACCGGCAGCTCCTCATCGTCTGCGTCCGTGT
CAGCTGGGAATGCCGCTGGCGGCTTTCTCTCGAATCTGGGAGGCGAACGC
CTAAGCCTTGGCTCGTCAAATTCGGCTGGCGGCAGTGCCACCTTCTTGGC
CGGCGGTGGAGGTGGAGGTCTGCTGGCCCAGCTCACTAGCCACTCCAGCG
CTTCGTCGTCGTCGTCCAATTTGATGAACATCAGCCTGAACAACTCGTCC
AGCGGCAATCTTGTTAACAGCAGCAGCAACTCCTCACTGTCGGCGTTTAC
GCCAACCAATCCGCCCAGCTCGGCGGCCACGGCCTTTATCCAGCCAGCCA
GTCCAATGGACACGTCCACCTGCAAGGACTAGAAGCTTTCTAGACCAT
BS32306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 1599 | CG6664-PC | 1..1599 | 134..1732 | 7890 | 99.6 | Plus |
| CG6664-RB | 1599 | CG6664-PB | 1..1599 | 134..1732 | 7890 | 99.6 | Plus |
| CG6664-RA | 1599 | CG6664-PA | 1..1599 | 134..1732 | 7890 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RA | 2482 | CG6664-RA | 308..1918 | 122..1732 | 7950 | 99.6 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 380..1988 | 124..1732 | 7940 | 99.6 | Plus |
| CG6664-RC | 2603 | CG6664-RC | 436..2039 | 129..1732 | 7915 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013993..17014904 | 1252..341 | 4560 | 100 | Minus |
| 3L | 28110227 | 3L | 17013450..17013930 | 1732..1252 | 2345 | 99.2 | Minus |
| 3L | 28110227 | 3L | 17015140..17015373 | 250..17 | 1125 | 98.7 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 340..250 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:09:01 has no hits.
BS32306.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-22 15:06:09 Download gff for
BS32306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1918 | 117..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:09 Download gff for
BS32306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1918 | 117..1732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:09 Download gff for
BS32306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013450..17013929 | 1253..1732 | 99 | <- | Minus |
| 3L | 17013993..17014904 | 341..1252 | 100 | <- | Minus |
| 3L | 17014987..17015077 | 250..340 | 100 | <- | Minus |
| 3L | 17015141..17015373 | 17..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-22 15:06:09 Download gff for
BS32306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006550..17007029 | 1253..1732 | 99 | <- | Minus |
| arm_3L | 17007093..17008004 | 341..1252 | 100 | <- | Minus |
| arm_3L | 17008087..17008177 | 250..340 | 100 | <- | Minus |
| arm_3L | 17008241..17008473 | 17..249 | 98 | | Minus |
BS32306.pep Sequence
Translation from 16 to 1731
> BS32306.pep
MYNIYVLKKRLAYIISRHTYMYMLKKRNGTGPFTFSFAGMESPCESESSL
DGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKTKCKVVQEENRC
LKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTN
DLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQAETDNKQTNLE
QLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQIKLDQPVSDPT
TPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLASAQKEATIKTQ
QYAQEEKSIREENARLQRKLKQEVERREALCRHLSESESSLEMDEERFYN
ENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSPSSSRPLSPGTA
VQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNVLTSTNPLLGIL
GTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGGSATFLAGGGGG
GLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNSSLSAFTPTNPP
SSAATAFIQPASPMDTSTCKD*
BS32306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PC | 532 | CG6664-PC | 1..532 | 40..571 | 2647 | 100 | Plus |
| CG6664-PB | 532 | CG6664-PB | 1..532 | 40..571 | 2647 | 100 | Plus |
| CG6664-PA | 532 | CG6664-PA | 1..532 | 40..571 | 2647 | 100 | Plus |
