BS32308.complete Sequence
1646 bp assembled on 2013-09-16
> BS32308.complete
GAAGTTATCAGTCGACATGGACCAGTATGGTGGCAACGCCAGCCCGGGAA
ATTTGTTCTCCAGCTCCATCACTGCCTTTCACGACAAGGACAGCCTAGAG
CCACGTCCTGGTAACAAATACAACCCGCGTCGCTTCAGCGCCCATCTGGA
GGAGCATCTGGTCAAGGAAAAGCGTATCACCAAATTCCCTCTGGTGGGCG
CCCTGGTCCACAAGGCACTGCGGCGTCGGGAGGAGGCAGAGGACGAGAAG
GTGCAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAACAACAA
CAACGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGGACCCG
ATGGCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTGCGCCC
CCCGCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAACATATA
CACAGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGTGGTCA
ACGGGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTACTCGAG
CGGAGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGCGGTCG
CAAGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGACTTCG
AGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCAC
AAGCACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTTCCAGA
TCTGATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAGCGCCA
CGGCACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCGCACTG
ACCAACCAGCACCAAACGGTGATCACCACCCAGGAGACGGGCCAGCAGCT
GGCCAGGAAGAAGGCGACCAAGGCGAAGGCGGCGGCCAAGCAGCTGGCGG
CTGCCAAGGCCTCTCAGTCCACCGAAAACGGAGCGGAGGGCGATGGAGCC
CAGCAGAACCTCATTCCTAACCCAAATCCCTTTACCACCGAAGATTACGG
CGTGGCGCTGCTGCACAACACGCTCCAGCTGATCGATATGCACGCAGAGC
TGCAGCTTTCGATGCCGGAGATCAGTGATCTCAGGTTCGAGGAGCTGGAG
ACGCTGGTCAAGAGGGATACCTTGCAGCTCAGGTCGGAGGTCACTCTGTT
CGAGTGCCTGGCCACGTGGAGTCTGGCGGAGTGCGCCCGCAAGCATATCG
ATGCCACGCCGGAGAACCGTCGCACTGTCCTCGGTCCACTATGCCTCACA
CCTCGTTACTTGCGGATGACCGCCAGCGAATTCCGGCGATGCTGCGAACG
CCTGGAGCTACTGCCACCCACTGAGATATCTCTTATCACCGACGCCCTCG
ATGGCAAAAAGCTAAAGAACCTCACCGATCAGCAGGCGGAGCTGCTGGAG
AAGTTCCGCCAGCCGCGTGCCGAATACGCCCGGATGCCCGTCCACCTGAG
CGACCGGAGCAGTCCGAAGAACTATCCCAAGAAGATGCGGCTGGCCCACG
AGGGTCGGCCCACGGAGGATGGATGCTGGGAGAAGGTGGGAATGAACTGT
CTCCGCATCTTCGTCTGCATATTTGACTGAAAGCTTTCTAGACCAT
BS32308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 1614 | CG8398-PA | 1..1614 | 17..1630 | 8040 | 99.9 | Plus |
| CG8398-RE | 1308 | CG8398-PE | 1..1308 | 323..1630 | 6525 | 99.9 | Plus |
| CG8398-RD | 1308 | CG8398-PD | 1..1308 | 323..1630 | 6525 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 2878 | CG8398-RA | 143..1759 | 14..1630 | 8055 | 99.9 | Plus |
| CG8398-RD | 2094 | CG8398-RD | 333..1908 | 55..1630 | 7850 | 99.9 | Plus |
| CG8398-RE | 1911 | CG8398-RE | 151..1725 | 56..1630 | 7845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6615897..6616600 | 55..758 | 3490 | 99.7 | Plus |
| 3L | 28110227 | 3L | 6616666..6617316 | 754..1404 | 3240 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6617767..6617994 | 1403..1630 | 1140 | 100 | Plus |
| 3L | 28110227 | 3L | 6609467..6609508 | 14..55 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:47:11 has no hits.
BS32308.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:10 Download gff for
BS32308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 146..1758 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:03 Download gff for
BS32308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 146..1758 | 17..1629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:03 Download gff for
BS32308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6617768..6617993 | 1404..1629 | 100 | | Plus |
| 3L | 6609470..6609508 | 17..55 | 100 | -> | Plus |
| 3L | 6615898..6616596 | 56..754 | 99 | -> | Plus |
| 3L | 6616667..6617315 | 755..1403 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:10 Download gff for
BS32308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6602570..6602608 | 17..55 | 100 | -> | Plus |
| arm_3L | 6608998..6609696 | 56..754 | 99 | -> | Plus |
| arm_3L | 6610868..6611093 | 1404..1629 | 100 | | Plus |
| arm_3L | 6609767..6610415 | 755..1403 | 99 | -> | Plus |
BS32308.pep Sequence
Translation from 16 to 1629
> BS32308.pep
MDQYGGNASPGNLFSSSITAFHDKDSLEPRPGNKYNPRRFSAHLEEHLVK
EKRITKFPLVGALVHKALRRREEAEDEKVQITGPEDNQHQQNNNNNDWEP
NRMVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPI
IVNPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNH
FQILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYC
IRELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKA
TKAKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLH
NTLQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLAT
WSLAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLP
PTEISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSP
KNYPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*
BS32308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-PA | 537 | CG8398-PA | 1..537 | 1..537 | 2827 | 100 | Plus |
| CG8398-PE | 435 | CG8398-PE | 1..435 | 103..537 | 2277 | 100 | Plus |
| CG8398-PD | 435 | CG8398-PD | 1..435 | 103..537 | 2277 | 100 | Plus |
| CG8398-PC | 435 | CG8398-PC | 1..435 | 103..537 | 2277 | 100 | Plus |
