Clone BS32314 Report

Search the DGRC for BS32314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:323
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptmod(r)-RB
Protein status:BS32314.pep: full length peptide match
Sequenced Size:623

Clone Sequence Records

BS32314.complete Sequence

623 bp assembled on 2013-05-22

> BS32314.complete
GAAGTTATCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCC
ACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAG
GAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGA
CGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCG
AGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATG
GACCAGGTGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCT
GGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACC
TAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGAT
GAATACGCGCCTCAGCATATCAGGATTGCAGCTTCCAATGCCGATGGCGA
CTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGACCGACGTGCAGA
CTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGTACCGAGCGCAAG
GCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCTGGAGCGGGCCGG
TATCTAGAAGCTTTCTAGACCAT

BS32314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RE 591 CG17828-PE 1..591 17..607 2955 100 Plus
mod(r)-RD 591 CG17828-PD 1..591 17..607 2955 100 Plus
mod(r)-RB 591 CG17828-PB 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-RE 1323 CG17828-RE 310..900 17..607 2955 100 Plus
mod(r)-RD 1331 CG17828-RD 318..908 17..607 2955 100 Plus
mod(r)-RB 1099 CG17828-RB 86..676 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 621891..622151 17..277 1290 99.6 Plus
X 23542271 X 622445..622628 424..607 920 100 Plus
X 23542271 X 622207..622358 273..424 760 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:40:48 has no hits.

BS32314.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:20 Download gff for BS32314.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RB 86..676 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:57 Download gff for BS32314.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RB 86..676 17..607 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:41 Download gff for BS32314.complete
Subject Subject Range Query Range Percent Splice Strand
mod(r)-RB 86..676 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:41 Download gff for BS32314.complete
Subject Subject Range Query Range Percent Splice Strand
X 621891..622146 17..272 100 -> Plus
X 622207..622358 273..424 100 -> Plus
X 622446..622628 425..607 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:57 Download gff for BS32314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 515924..516179 17..272 100 -> Plus
arm_X 516240..516391 273..424 100 -> Plus
arm_X 516479..516661 425..607 100   Plus

BS32314.pep Sequence

Translation from 16 to 606

> BS32314.pep
MPTTPQDLALAHSLAQRPPTDSSEAKEQEAGESDNLPNLCTLSLDELKQL
DRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR
RLSDDFTALKNLGEKCDRLNKKYFKKSDEYAPQHIRIAASNADGDCDRHV
EHFLNGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLSALERAGI*

BS32314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
mod(r)-PE 196 CG17828-PE 1..196 1..196 1016 100 Plus
mod(r)-PD 196 CG17828-PD 1..196 1..196 1016 100 Plus
mod(r)-PB 196 CG17828-PB 1..196 1..196 1016 100 Plus
mod(r)-PF 200 CG17828-PF 1..200 1..196 1001 98 Plus
mod(r)-PC 200 CG17828-PC 1..200 1..196 1001 98 Plus