BS32319.complete Sequence
1328 bp assembled on 2013-05-22
> BS32319.complete
GAAGTTATCAGTCGACATGAGTAGAACCATTATTATGACGCTTAAGGACA
TTGTGCATGTGTGGTCCAACGACCCGGGAGAACGGATGTGCCGAGCGAAC
AGAGTATCAACATGGTTCTCCGAGGTGCAGATGGGCCCACCCGATGCCAT
CTTGGGTGTCACGGAAGCCTTCAAGAAGGACACCAACCCCAAGAAGATCA
ACTTGGGCGCTGGCGCCTATCGCGATGACAACACCCAGCCCTTCGTGCTC
CCCAGTGTTCGGGAGGCCGAGAAGAGAGTGGTGAGCCGTAGTCTGGACAA
GGAGTACGCCACAATCATCGGCATTCCCGAGTTCTACAACAAGGCCATCG
AGCTGGCATTGGGCAAGGGATCCAAGCGTCTGGCGGCCAAGCACAACGTG
ACCGCCCAGTCCATCAGTGGAACTGGAGCTCTGCGCATCGGAGCCGCCTT
CCTGGCCAAGTTCTGGCAGGGCAACCGCGAGATCTACATCCCGTCGCCAT
CGTGGGGTAACCATGTGGCCATTTTCGAGCACGCTGGTCTGCCGGTGAAC
CGATACCGCTACTACGACAAGGACACCTGTGCCCTGGACTTTGGCGGCCT
GATCGAGGATCTGAAGAAAATCCCCGAGAAGAGCATTGTTCTTCTGCACG
CCTGCGCCCACAACCCCACTGGAGTGGATCCCACTCTGGAGCAGTGGCGT
GAGATCTCGGCTCTGGTAAAGAAACGCAATCTGTATCCCTTCATCGACAT
GGCCTACCAGGGCTTCGCCACCGGAGACATTGACCGCGACGCCCAGGCGG
TCCGCACCTTCGAGGCCGATGGCCACGACTTCTGCCTGGCCCAGAGTTTC
GCCAAGAACATGGGATTGTATGGTGAGCGCGCTGGCGCCTTCACCGTGCT
GTGCTCCGACGAGGAGGAGGCTGCTCGCGTGATGTCCCAAGTGAAGATCC
TGATCCGTGGTCTGTACTCCAATCCCCCGGTGCACGGAGCTCGTATTGCC
GCCGAGATCCTCAACAACGAGGACTTGCGCGCCCAGTGGCTGAAGGATGT
GAAGCTGATGGCCGACCGCATCATCGATGTGCGCACCAAGCTCAAGGACA
ATCTAATTAAGCTGGGATCCAGCCAGAACTGGGACCACATTGTCAACCAA
ATCGGCATGTTCTGCTTCACGGGCCTGAAGCCGGAGCAGGTGCAGAAGCT
GATCAAGGATCACAGCGTCTATCTCACCAACGATGGACGTGTTTCGATGG
CGGGAGTCACCAGCAAGAATGTCGAGTACCTGGCTGAGAGCATACACAAG
GTTACCAAGTAAAAGCTTTCTAGACCAT
BS32319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got2-RB | 1296 | CG4233-PB | 1..1296 | 17..1312 | 6390 | 99.5 | Plus |
| Got2-RA | 1275 | CG4233-PA | 69..1275 | 106..1312 | 5945 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got2-RB | 1560 | CG4233-RB | 71..1366 | 17..1312 | 6390 | 99.5 | Plus |
| Got2-RA | 1575 | CG4233-RA | 175..1381 | 106..1312 | 5945 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1984706..1985403 | 1312..615 | 3445 | 99.6 | Minus |
| 2L | 23513712 | 2L | 1985471..1985721 | 616..366 | 1210 | 98.8 | Minus |
| 2L | 23513712 | 2L | 1985945..1986105 | 266..106 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 1985781..1985885 | 368..264 | 525 | 100 | Minus |
| 2L | 23513712 | 2L | 1986797..1986885 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3619..3678 | 341..282 | 111 | 65 | Minus |
BS32319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:26 Download gff for
BS32319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RB | 71..1364 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:12:06 Download gff for
BS32319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RB | 71..1364 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:49 Download gff for
BS32319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RB | 71..1364 | 17..1310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:49 Download gff for
BS32319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1984708..1985401 | 617..1310 | 99 | <- | Minus |
| 2L | 1985471..1985719 | 368..616 | 98 | <- | Minus |
| 2L | 1985782..1985883 | 266..367 | 100 | <- | Minus |
| 2L | 1985946..1986105 | 106..265 | 100 | <- | Minus |
| 2L | 1986797..1986885 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:12:06 Download gff for
BS32319.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1984708..1985401 | 617..1310 | 99 | <- | Minus |
| arm_2L | 1985471..1985719 | 368..616 | 98 | <- | Minus |
| arm_2L | 1985782..1985883 | 266..367 | 100 | <- | Minus |
| arm_2L | 1985946..1986105 | 106..265 | 100 | <- | Minus |
| arm_2L | 1986797..1986885 | 17..105 | 100 | | Minus |
BS32319.pep Sequence
Translation from 16 to 1311
> BS32319.pep
MSRTIIMTLKDIVHVWSNDPGERMCRANRVSTWFSEVQMGPPDAILGVTE
AFKKDTNPKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYATI
IGIPEFYNKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKFW
QGNREIYIPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDLK
KIPEKSIVLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQGF
ATGDIDRDAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDEE
EAARVMSQVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMAD
RIIDVRTKLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDHS
VYLTNDGRVSMAGVTSKNVEYLAESIHKVTK*
BS32319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got2-PB | 431 | CG4233-PB | 1..431 | 1..431 | 2249 | 100 | Plus |
| Got2-PA | 424 | CG4233-PA | 24..424 | 31..431 | 2089 | 100 | Plus |
| Got1-PA | 416 | CG8430-PA | 4..398 | 34..427 | 938 | 46.9 | Plus |
| Got1-PB | 437 | CG8430-PB | 25..419 | 34..427 | 938 | 46.9 | Plus |
