BS32326.complete Sequence
3170 bp assembled on 2013-09-16
> BS32326.complete
GAAGTTATCAGTCGACATGGCGCTGGTGACGGTGCAGCGCTCTCCCAGTG
TGGCGGGCTCCTGCTCGAATTCGGATGGCGAGTCCGAGGACGACGAGGGC
AATAGCAAAGGAAACGATCGCAGCGAGTGCTTCTTTGCCGGCAAGGGAAC
CGCCCTGGTACTGGCTCTTAAGGATATCCCGCCCCTGACGCAAAGCGAGC
GTCGCCTGAGCACCGACTCCACCCGCTCCAGTAACAGTACGCAAAGCAAC
AACTCGGACATCCAGCTCCACCTGCAATCAATGTTTTACCTGTTGCAGCG
CGAGGACACGCTAAAGATGGCTGTCAAGTTGGAGTCACAGCGGTCCAACC
GCACGCGCTATCTGGTGATTGCATCGCGTAGTTGTTGTCGGAGCGGCACC
AGCGACCGTCGGCGCCACCGGATCATGCGTCACCACTCGGTAAAAGTTGG
TGGATCCGCGGGAACAAAGTCGTCCACCTCCCCGGCGGTCCCCACGCAGC
GTCAGCTGTCCGTTGAGCAGACCGCCACAGAGGCCAGCAGCAAATGTGAT
AAAACAGCAGACAAGGAAAACGCAACGGCGGCCGGCGACAACAAGAATAC
CTCGGGCATGGAGGAGTCCTGCCTGCTGGGCATAGACTGCAACGAGCGGA
CCACCATTGGCCTGGTGGTGCCCATCCTGGCGGACACCACAATTCACCTG
GATGGCGATGGCGGATTCAGCGTCAAAGTGTACGAAAAAACGCATATATT
TAAGCCGGTCTCAGTGCAGGCCATGTGGTCCGCGCTGCAGACGCTGCACA
AAGTGTCGAAAAAGGCTCGTGAGAACAACTTCTATGCCAGTGGACCCTCC
CACGACTGGCTATCCAGCTACGAGAGGCGCATCGAGTCGGACCAGTCTTG
TCTGAACGAGTGGAATGCCATGGACGCGCTCGAGAGCCGCCGACCACCTT
CGCCTGATGCCATACGAAACAAACCCCCCGAAAAGGAGGAAACCGAAAGT
GTCATTAAGATGAAGCTGAAGGCCATCATGATGTCAGTGGACCTGGACGA
GGTCACCTCCAAGTATATACGCGGACGCCTCGAGGAGATCCTGGACATGG
ATTTGGGCGAGTACAAGTCGTTTATCGACGCCGAAATGCTCGTTATTCTA
GGCCAAATGGATGCCCCCACCAAGATTTTCGAGCACGTCTATCTGGGATC
AGAGTGGAATGCCAGCAACTTGGAGGAGCTGCAGAAAAACGGCGTTCGCC
ACATCCTGAACGTGACGCGGGAGATCGATAACTTCTTTCCGGGCACCTTC
GAGTATTTCAACGTTCGCGTGTACGACGATGAGAAGACGAACCTGCTCAA
GTACTGGGACGATACGTTCCGCTACATCACGCGGGCGAAAGCCGAGGGAT
CCAAGGTGCTGGTGCACTGCAAGATGGGCGTCAGCCGATCCGCCTCGGTT
GTCATCGCGTATGCCATGAAGGCTTACCAGTGGGAGTTCCAGCAGGCGCT
AGAGCACGTGAAGAAGAGGCGCAGCTGTATAAAGCCCAACAAGAACTTCC
TCAATCAGCTGGAGACGTATAGTGGGATGTTGGACGCCATGAAGAACAAG
GAGAAGCTGCAGCGCAGCAAGAGCGAGACGAACTTGAAGAGCACAAAGGA
CGCGCGTCTGTTGCCTGGTAGCGAACCAACGCCCCTCATTCAGGCTCTAA
ACCAGGCCAAGTCGAAGTCGACTGGTGAAGCGGGCGTAACACCCGATGGC
GAAGAGGAAGATGGCTCACGCATGCACCGGCGATCCATCGCCCAGAAGTC
GCAGCGTCGCATGGTTAGACGCTCGAGCAGCACATCACCCAAAACCCAGA
CGGCTGTGGTTACCAAGCAGCAAAGCCAGTCTATGGAGAACCTTACGCCG
GAACGTAGCGTGGCCGAGGAGCCAAAAAATATGCGCTTCCCAGGCAGCAA
CGGCGAGAACTACAGCGTCACCCAGAACCAGGTGCTGCACATCCAGAAAC
ACACGCCTCTGTCAGTGCGCACACGAATTCACGATCTCGAGGCGCACCGG
GCGGACCAGCTGCCACAGCAACCTGTCTGGACCTCGCTGACAAAACTGAT
TACACAGACCTCTCACTTGGGAAAAAGTGTCAGTGGCAGCAGTAGTGGAA
ATATTGACTCGCGGCGGGATTCTAGCTGTTCGGATGTATTCTCCTCGCAG
GTGGACAGTGTTTTTGCCAAGGATGAAGGGGAGAAGCGCCAGCGTCGAAA
GACGCACTCCTGGACAGAGTCCTTGGGTCCAAGTGGCGGCATCGTCCTGG
ACCCCACGCCACAGCAACAGAAGCAGCAGTCAAACGCCATTCTGCGTCCC
CGAGGCACACGTCAGCGGGAGCTGCCTTCGCGGCACGCAAGTTGGGGATC
AGGAGACAACCGATGCTGTCTGCCGCAGAGGACCAGTTCCGGCTCCTACT
ATGACTCCAATCGCAACACTACGGCCATCTTCGAGGGCGTTATCCAAGAC
CTCAAGCGCAGTTCCAATTGCAATGTAATCGAAGGAGTCGCCGTTGCTGT
GGAACCGATAGTTGGAGTTGGCGAGGGCACCGTAAAGCGCACCAAGCAGA
AGCTGGAAGAGAGCACCTCGCTGAAAAAGCGCTGCCAGGAAGAAAGCCAG
GAGCTGCTACTCGAGGCTGTGGATGCTGGGCAGAGGCGGTGCCCAAGCCT
CTATAGGAGCGCCTCCTCGGCGCACAGTCCGCGGCAGCGTCAGCCACTAC
GCTGTAATAGTGAGGAGCTGATGCACACCAGCGACATCGAGAACAAGAAC
ACCACGCCAGGCGACCATGAGGCGACGGTAGTGCTGCGCGTCCAGGGACA
AACGCTGGCCGACGATCAGCGCATCTCGGGCAATGTGCAAATACTCAAGC
AAAATTTCGAAGCCAAAGCGGGAGTGGTGGGCACAGGAGGAGGAGGAGGC
GGTGGCACTGCAGCGGGATCGGGCAGTAGTTCAACAATCGCAACGTCGGT
ATCGGCGGTGGCCGGAGCCTGCTCAGCGAATCCCGGCAAGAAGACGACTA
GCCACCAATCACTGCCATCGTCGCCGGTGGCGCAGCATGCCAACCACGTG
TCCGCCGCCTCCAACTCCAACTCCTCCGCCTCCAACTCGTCCGATTCCAG
CTAGAAGCTTTCTAGACCAT
BS32326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssh-RD | 3138 | CG6238-PD | 1..3138 | 17..3154 | 15600 | 99.8 | Plus |
| ssh-RA | 3579 | CG6238-PA | 1..3135 | 17..3151 | 15585 | 99.8 | Plus |
| ssh-RC | 3141 | CG6238-PC | 60..3141 | 73..3154 | 15320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssh-RD | 4419 | CG6238-RD | 483..3620 | 17..3154 | 15600 | 99.8 | Plus |
| ssh-RA | 4780 | CG6238-RA | 483..3617 | 17..3151 | 15585 | 99.8 | Plus |
| ssh-RC | 4186 | CG6238-RC | 306..3387 | 73..3154 | 15320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24939873..24941782 | 3151..1242 | 9460 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24942819..24943211 | 711..319 | 1965 | 100 | Minus |
| 3R | 32079331 | 3R | 24941867..24942142 | 1242..967 | 1365 | 99.6 | Minus |
| 3R | 32079331 | 3R | 24943275..24943522 | 320..73 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 24942203..24942398 | 972..777 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 24942459..24942527 | 779..711 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 24944417..24944474 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:47:26 has no hits.
BS32326.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:17 Download gff for
BS32326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssh-RD | 483..3620 | 17..3154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:09 Download gff for
BS32326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssh-RD | 483..3620 | 17..3154 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:09 Download gff for
BS32326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24939868..24941781 | 1243..3154 | 99 | <- | Minus |
| 3R | 24941867..24942136 | 973..1242 | 100 | <- | Minus |
| 3R | 24942203..24942397 | 778..972 | 100 | <- | Minus |
| 3R | 24942461..24942526 | 712..777 | 100 | <- | Minus |
| 3R | 24942819..24943210 | 320..711 | 100 | <- | Minus |
| 3R | 24943276..24943521 | 74..319 | 100 | <- | Minus |
| 3R | 24944418..24944474 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:17 Download gff for
BS32326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20765590..20767503 | 1243..3154 | 99 | <- | Minus |
| arm_3R | 20767589..20767858 | 973..1242 | 100 | <- | Minus |
| arm_3R | 20767925..20768119 | 778..972 | 100 | <- | Minus |
| arm_3R | 20768183..20768248 | 712..777 | 100 | <- | Minus |
| arm_3R | 20768541..20768932 | 320..711 | 100 | <- | Minus |
| arm_3R | 20768998..20769243 | 74..319 | 100 | <- | Minus |
| arm_3R | 20770140..20770196 | 17..73 | 100 | | Minus |
BS32326.pep Sequence
Translation from 16 to 3153
> BS32326.pep
MALVTVQRSPSVAGSCSNSDGESEDDEGNSKGNDRSECFFAGKGTALVLA
LKDIPPLTQSERRLSTDSTRSSNSTQSNNSDIQLHLQSMFYLLQREDTLK
MAVKLESQRSNRTRYLVIASRSCCRSGTSDRRRHRIMRHHSVKVGGSAGT
KSSTSPAVPTQRQLSVEQTATEASSKCDKTADKENATAAGDNKNTSGMEE
SCLLGIDCNERTTIGLVVPILADTTIHLDGDGGFSVKVYEKTHIFKPVSV
QAMWSALQTLHKVSKKARENNFYASGPSHDWLSSYERRIESDQSCLNEWN
AMDALESRRPPSPDAIRNKPPEKEETESVIKMKLKAIMMSVDLDEVTSKY
IRGRLEEILDMDLGEYKSFIDAEMLVILGQMDAPTKIFEHVYLGSEWNAS
NLEELQKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDT
FRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKK
RRSCIKPNKNFLNQLETYSGMLDAMKNKEKLQRSKSETNLKSTKDARLLP
GSEPTPLIQALNQAKSKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRMV
RRSSSTSPKTQTAVVTKQQSQSMENLTPERSVAEEPKNMRFPGSNGENYS
VTQNQVLHIQKHTPLSVRTRIHDLEAHRADQLPQQPVWTSLTKLITQTSH
LGKSVSGSSSGNIDSRRDSSCSDVFSSQVDSVFAKDEGEKRQRRKTHSWT
ESLGPSGGIVLDPTPQQQKQQSNAILRPRGTRQRELPSRHASWGSGDNRC
CLPQRTSSGSYYDSNRNTTAIFEGVIQDLKRSSNCNVIEGVAVAVEPIVG
VGEGTVKRTKQKLEESTSLKKRCQEESQELLLEAVDAGQRRCPSLYRSAS
SAHSPRQRQPLRCNSEELMHTSDIENKNTTPGDHEATVVLRVQGQTLADD
QRISGNVQILKQNFEAKAGVVGTGGGGGGGTAAGSGSSSTIATSVSAVAG
ACSANPGKKTTSHQSLPSSPVAQHANHVSAASNSNSSASNSSDSS*
BS32326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssh-PD | 1045 | CG6238-PD | 1..1045 | 1..1045 | 5356 | 100 | Plus |
| ssh-PA | 1192 | CG6238-PA | 1..1045 | 1..1045 | 5356 | 100 | Plus |
| ssh-PC | 1046 | CG6238-PC | 16..1046 | 15..1045 | 5265 | 99.6 | Plus |
| ssh-PB | 1193 | CG6238-PB | 16..1046 | 15..1045 | 5265 | 99.6 | Plus |
| Mkp3-PA | 241 | CG14080-PA | 43..186 | 382..522 | 202 | 31.2 | Plus |
