BS32336.complete Sequence
1040 bp assembled on 2013-05-22
> BS32336.complete
GAAGTTATCAGTCGACATGCGAACCGACGTGACCAATGTCCGCCCGCAGG
ATGTGCTTACCAAGGATTCGGTTACGATTACCGTAAATGCCGTCGTGTAC
TACTGCATCTACAGTCCCATTGACTCCATTATTCAAGTGGACGATGCAAA
ACAGGCCACCCAGCTCATTTCCCAGGTCACGCTGCGTAATATCGTGGGAT
CAAAGACGCTTAATGTCCTCTTGACCTCCAGGCAGCAACTCTCAAGGGAA
ATTCAGCAGGCAGTAGCTGGAATCACATATCGCTGGGGAGTTCGCGTTGA
GCGGGTGGATGTAATGGATATCACATTACCAACTAGTCTTGAAAGATCCT
TGGCCAGCGAGGCTGAAGCTGTAAGGGAAGCTCGTGCCAAGATAATTCTG
GCCGAAGGTGAGCTAAAGGCTTCCAAGGCTCTAAAGGAGGCCTCCGATGT
GATGTCGGAGAACAAGATTACACTACAGCTGAGGCATCTGCAGATCCTAT
CCTCGATCGCCTCGGAGCGAAGAGTAAGGATAATTTATCCTATTCCTCTG
GAGATTATGGAGCCCTTTATGTCTGGCAAGGAGGGGCAAAAAAAAGATGG
TGGAGGTGGAGGTGGTGGTGGCAAGGAAACTAAGAAGGAAGATGTGGCCG
GAGGTAGCAAGGAAACCCGAAAGGAAGGTGGTGGTTCTGATAGTTTCAGT
GGCGGAAGTAGTGGAGGACTTTTGTCCAAATTTATTTTTGCTGGTAAGGA
AGAGAAGAACCAAACTACAAGAGCAGGTACTGGTGAAGCCTTAGCATTAA
ATCAAGAAACCGACGAAGGCCTGGAAGTTAGAAAAGATGAGGAAAATCGG
AGACCTACATTTGTGGCCTACGAAATGGAGTGTGTTAAACAGAGTCCTGC
GAAGTTTGCCGATGACGTTGACGCTGCCGAGACGAATCAGAAGCGCGCTG
CTCCACGTCGACCAGGAGGCCTGGCGTTTATGGACCTGCAATCTTATCGG
GACTTCCTACGAACTCGTTGGTAAAAGCTTTCTAGACCAT
BS32336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14736-RD | 1368 | CG14736-PD | 354..1368 | 10..1024 | 5045 | 99.8 | Plus |
| CG14736-RF | 1008 | CG14736-PF | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG14736-RG | 1422 | CG14736-PG | 354..1122 | 10..778 | 3815 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14736-RF | 1658 | CG14736-RF | 415..1429 | 10..1024 | 5045 | 99.8 | Plus |
| CG14736-RD | 1663 | CG14736-RD | 420..1434 | 10..1024 | 5045 | 99.8 | Plus |
| CG14736-RG | 1717 | CG14736-RG | 420..1188 | 10..778 | 3815 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12041663..12041964 | 477..778 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 12041064..12041366 | 10..312 | 1485 | 99.3 | Plus |
| 3R | 32079331 | 3R | 12041445..12041610 | 313..478 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 12042015..12042100 | 775..860 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 12042387..12042450 | 903..966 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 12042529..12042590 | 963..1024 | 310 | 100 | Plus |
| 3R | 32079331 | 3R | 12031012..12031277 | 309..44 | 265 | 73.3 | Minus |
| 3R | 32079331 | 3R | 12042163..12042204 | 861..902 | 210 | 100 | Plus |
| 3R | 32079331 | 3R | 12030789..12030937 | 477..329 | 205 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:41:16 has no hits.
BS32336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:29 Download gff for
BS32336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14736-RD | 427..1432 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:12:12 Download gff for
BS32336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14736-RD | 427..1432 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:52 Download gff for
BS32336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14736-RD | 427..1432 | 17..1022 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:52 Download gff for
BS32336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12041071..12041366 | 17..312 | 100 | -> | Plus |
| 3R | 12041445..12041610 | 313..478 | 100 | -> | Plus |
| 3R | 12041665..12041962 | 479..776 | 100 | -> | Plus |
| 3R | 12042017..12042100 | 777..860 | 100 | -> | Plus |
| 3R | 12042163..12042204 | 861..902 | 100 | -> | Plus |
| 3R | 12042387..12042453 | 903..968 | 97 | -> | Plus |
| 3R | 12042535..12042588 | 969..1022 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:12:12 Download gff for
BS32336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7866793..7867088 | 17..312 | 100 | -> | Plus |
| arm_3R | 7867167..7867332 | 313..478 | 100 | -> | Plus |
| arm_3R | 7867387..7867684 | 479..776 | 100 | -> | Plus |
| arm_3R | 7867739..7867822 | 777..860 | 100 | -> | Plus |
| arm_3R | 7867885..7867926 | 861..902 | 100 | -> | Plus |
| arm_3R | 7868109..7868175 | 903..968 | 97 | -> | Plus |
| arm_3R | 7868257..7868310 | 969..1022 | 100 | | Plus |
BS32336.pep Sequence
Translation from 16 to 1023
> BS32336.pep
MRTDVTNVRPQDVLTKDSVTITVNAVVYYCIYSPIDSIIQVDDAKQATQL
ISQVTLRNIVGSKTLNVLLTSRQQLSREIQQAVAGITYRWGVRVERVDVM
DITLPTSLERSLASEAEAVREARAKIILAEGELKASKALKEASDVMSENK
ITLQLRHLQILSSIASERRVRIIYPIPLEIMEPFMSGKEGQKKDGGGGGG
GGKETKKEDVAGGSKETRKEGGGSDSFSGGSSGGLLSKFIFAGKEEKNQT
TRAGTGEALALNQETDEGLEVRKDEENRRPTFVAYEMECVKQSPAKFADD
VDAAETNQKRAAPRRPGGLAFMDLQSYRDFLRTRW*
BS32336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14736-PF | 335 | CG14736-PF | 1..335 | 1..335 | 1673 | 100 | Plus |
| CG14736-PD | 455 | CG14736-PD | 121..455 | 1..335 | 1673 | 100 | Plus |
| CG14736-PG | 473 | CG14736-PG | 121..473 | 1..335 | 1644 | 94.9 | Plus |
| CG14736-PE | 473 | CG14736-PE | 121..473 | 1..335 | 1644 | 94.9 | Plus |
| CG31358-PB | 474 | CG31358-PB | 92..280 | 1..189 | 739 | 79.9 | Plus |
