BS32339.complete Sequence
2678 bp assembled on 2013-09-16
> BS32339.complete
GAAGTTATCAGTCGACATGCTACGGCTGTGGGCCTGCCTGCTCCTCCTGG
GATCAATCCAGATCCAGGCGGTTCCATTCTACGGCGACTTTATGCCACAT
TTAACCCACCCATTGCCGGCGCATCGCAATCTGTTCGCGCCCCTGCCCTT
CGCACCACTCGCACCGCTCGAGCCCCAAGATCCACTGCATGCCCAGGCCT
CGCAGCGGATGGCGAGCGTCTGGAACGGTCCCGCCCCGTTGGCGCCGCAA
CTCCACTCATCTCACCTGTTGCCCCTCTTCAGCAGCGGATACGACACCGA
GTTCGTGCCACTGGAGCACCAGCAGCAGCCGCAGGGACGCCAGGAGACGG
CGGCCACCGTTCCCGCTCAAACCCCCAGCGGTGTGGAGCAGAAGCCGTTC
AATGTGGACACCATCACCACGGATGTGAATTCCCCAAATCCGGCCATCTT
CTTCCAGCAATCGTTCCCCTTCTTTGGCAATGAGTTCTTCAATTCGTTCG
GAGGCTTTGGCTTTGGAGCTGCCCAGGAGCCCTGGTGGAAGGGACCCAAT
GTGTGCACCGAAAAGGAGGAAGACGAGACTGTGGCCAGTGAAACGGAGGC
AGAAGAAACCGTGGACACCTTTGGCCAGGAACGTGATGGCGTTACCAACG
TGGTGCGATCCCCACTCTTTGGCCAGTTCCAGTTCAGCGTTAACTCCTGC
GCCGAGAAGCCCAACAAGCACGTCTGCACCAAGATCGTGAATCAAAATGG
CAAGAAGAAAACGCTGACGCTGACCCGCCAGTGCTGCTATGGATATGGAC
GCCCCAGAAACGCTGACTTCACAACGCCCTGCGAGAAGATCGACATCAAG
GACGTGGAGGCCACGGCCAGTGACATGGGTGCCAAGCAGTTCCTGGAGAG
TGCACGCACCGCCGGTGAGCTGGCCGATATGCTCGGAGCAGGCAGTGGCA
AGAAGGTGACCCTCTTCGTGCCCAACGACGCCGCCTTCATGGAGTACCGT
GGTCATCATCAGCAGGAGAATAATGTGGAAGATGCCAAGGCCGAGGCTTC
CAAGCCATCCATCTACAAACTGCACGCTGTTCTCGGCGAAGTTCAGCTGG
AGGATGTGCCCAATGAGAAGCTTCTGCAGACGGAGCTGCCTGACCAGAAG
ATCCGCATCAACAGCTACCAGCTGCCTGCGGCTTTGGGCCTGGAACCCTA
CCGCTTTGCCGCCAACTGTGTGCCCATCGAGAAGCACGACAAGCTCTCGG
AGCAGGCCCTTGTCCACACTCTGGGCGGAGTCCTAAAGCCGCTGACCAAG
AACCTTATGGATATCATCAGGGAGCGTGCGGATATGTCCATTATGCGCAC
CGTTCTGGAGAAGACCAACCTGAGCGCCATGCTAGAGGATGACAAGCCAG
TGACCATCTTTGTGCCCACTGATGCCGCCTTCGACAAGTTGGAACCTCAT
CTGCGTCGAGCCCTCAAGGAAGGTCGCGGTTGTGCCTCCAACATCCTGAA
GAACCATTTGCTGGACCTCACCTTCTGCTCGCTGGCCACTGTTCCGGGTG
CCAAGACGACGGCCTACAATCTACTGGGAGAACCCCTGCTCCTCAACCGA
ACCCACCGCGCTGCGAATCAGACTGGACCGACTCCCATCTACATTAATAA
CTTGGCCAAAATCATTGATGCCGATATCATGGGCACCAATGGTGTTCTGC
ACGTAATCGACACCATCCTGCCCACCGAATCGGCTCTGCCCATGACCTCG
CTGATGTCGCAAAAGAACCTGACCATCTTCCAGCGATTGCTGGAGGCCTC
CGGCTACGATGATCAGTTCGACGATCTGGACAACGTGACCATCTTTGCAC
CAACTGACAAGGCTCTGCAGAATACGGAATGGGCTCGCATGCTCAAGGAA
CAGCCGGAGCTGCTGAATCATAACTTGGATCTGCTGGAGTTCCTTAACTA
CCATGTGGTCAAGCCCATGATCAAGACCTGTGACCTGTCGGAGAAGTCCC
TGCCCACGGTTGCTGGATCTAGTGTGCGTCTGAACCTGTACTCCACCCAT
GCTCTCTTCTCGGACGTGATGAACCGGGCAACGGTAAACTGTGCCCGTTT
GGTGCACTTCGATGACGAGAGCTGCGGATCCGTTCTCCACCAGGTGGATC
GTGCCTTGGCGCCTCCCAAGAATAACATGCTTAAGCTGCTGGAGGCTAAT
CCCAACTACAGCAAGTTCCTGGAGCTGGTTCGTAAGGCTAATCTTACACA
GCTGCTGTCCAACGATTCGAGGAGTCTCACCCTGCTGGTGCCAAAGAACG
ATATCTTCGAGGAGCTGAACGAGTCCGGTGAGGGTTCAAAGCCCGCCGAT
CCCATGGCCTTGGTCAAAACCCATATCGTTGAGGATGTTGTCTGCTGTGC
CGGCATTATCCCAACCAACTGGCCATTTGTCCGCTCCATTGAGTCCATCT
CTGGCCAGCATCTGCGTATCACCCGCGATCGTCGTCCCAAGATCGAGAAC
GCCGGCGTCACCAAGTGCGATGTGGTTGCCACCAATGGAATTCTCCACGA
GATCAACGACATCATCGTGCCACGCCCACAGCGCCAGCAACAGCAGCGAC
CCCAGCTGATCCCGCCCGGAGCTGGCTATCAGCCACAGGGCGATTTCGAT
GTCTTCTTCTGAAAGCTTTCTAGACCAT
BS32339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RK | 2646 | CG3359-PK | 1..2646 | 17..2662 | 13110 | 99.7 | Plus |
| mfas-RI | 2646 | CG3359-PI | 1..2646 | 17..2662 | 13110 | 99.7 | Plus |
| mfas-RC | 2646 | CG3359-PC | 1..2646 | 17..2662 | 13110 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RK | 2912 | CG3359-RK | 128..2775 | 15..2662 | 13120 | 99.7 | Plus |
| mfas-RI | 2890 | CG3359-RI | 106..2753 | 15..2662 | 13120 | 99.7 | Plus |
| mfas-RC | 3007 | CG3359-RC | 223..2870 | 15..2662 | 13120 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11985549..11986231 | 2173..1491 | 3385 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11984999..11985487 | 2662..2174 | 2400 | 99.4 | Minus |
| 3R | 32079331 | 3R | 11986304..11986772 | 1490..1022 | 2315 | 99.6 | Minus |
| 3R | 32079331 | 3R | 11989210..11989523 | 401..88 | 1555 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11986835..11987120 | 1021..736 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 11987185..11987377 | 735..543 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 11988658..11988799 | 543..402 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 11992742..11992814 | 87..15 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:46:50 has no hits.
BS32339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:02 Download gff for
BS32339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RC | 225..2869 | 17..2661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:55 Download gff for
BS32339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RC | 225..2869 | 17..2661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:55 Download gff for
BS32339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11985000..11985487 | 2174..2661 | 99 | <- | Minus |
| 3R | 11985549..11986231 | 1491..2173 | 99 | <- | Minus |
| 3R | 11986304..11986772 | 1022..1490 | 99 | <- | Minus |
| 3R | 11986835..11987120 | 736..1021 | 100 | <- | Minus |
| 3R | 11987185..11987376 | 544..735 | 100 | <- | Minus |
| 3R | 11988658..11988799 | 402..543 | 100 | <- | Minus |
| 3R | 11989210..11989523 | 88..401 | 99 | <- | Minus |
| 3R | 11992742..11992812 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:02 Download gff for
BS32339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7810722..7811209 | 2174..2661 | 99 | <- | Minus |
| arm_3R | 7811271..7811953 | 1491..2173 | 99 | <- | Minus |
| arm_3R | 7812026..7812494 | 1022..1490 | 99 | <- | Minus |
| arm_3R | 7812557..7812842 | 736..1021 | 100 | <- | Minus |
| arm_3R | 7812907..7813098 | 544..735 | 100 | <- | Minus |
| arm_3R | 7814380..7814521 | 402..543 | 100 | <- | Minus |
| arm_3R | 7814932..7815245 | 88..401 | 99 | <- | Minus |
| arm_3R | 7818464..7818534 | 17..87 | 100 | | Minus |
BS32339.pep Sequence
Translation from 16 to 2661
> BS32339.pep
MLRLWACLLLLGSIQIQAVPFYGDFMPHLTHPLPAHRNLFAPLPFAPLAP
LEPQDPLHAQASQRMASVWNGPAPLAPQLHSSHLLPLFSSGYDTEFVPLE
HQQQPQGRQETAATVPAQTPSGVEQKPFNVDTITTDVNSPNPAIFFQQSF
PFFGNEFFNSFGGFGFGAAQEPWWKGPNVCTEKEEDETVASETEAEETVD
TFGQERDGVTNVVRSPLFGQFQFSVNSCAEKPNKHVCTKIVNQNGKKKTL
TLTRQCCYGYGRPRNADFTTPCEKIDIKDVEATASDMGAKQFLESARTAG
ELADMLGAGSGKKVTLFVPNDAAFMEYRGHHQQENNVEDAKAEASKPSIY
KLHAVLGEVQLEDVPNEKLLQTELPDQKIRINSYQLPAALGLEPYRFAAN
CVPIEKHDKLSEQALVHTLGGVLKPLTKNLMDIIRERADMSIMRTVLEKT
NLSAMLEDDKPVTIFVPTDAAFDKLEPHLRRALKEGRGCASNILKNHLLD
LTFCSLATVPGAKTTAYNLLGEPLLLNRTHRAANQTGPTPIYINNLAKII
DADIMGTNGVLHVIDTILPTESALPMTSLMSQKNLTIFQRLLEASGYDDQ
FDDLDNVTIFAPTDKALQNTEWARMLKEQPELLNHNLDLLEFLNYHVVKP
MIKTCDLSEKSLPTVAGSSVRLNLYSTHALFSDVMNRATVNCARLVHFDD
ESCGSVLHQVDRALAPPKNNMLKLLEANPNYSKFLELVRKANLTQLLSND
SRSLTLLVPKNDIFEELNESGEGSKPADPMALVKTHIVEDVVCCAGIIPT
NWPFVRSIESISGQHLRITRDRRPKIENAGVTKCDVVATNGILHEINDII
VPRPQRQQQQRPQLIPPGAGYQPQGDFDVFF*
BS32339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-PK | 881 | CG3359-PK | 1..881 | 1..881 | 4617 | 100 | Plus |
| mfas-PI | 881 | CG3359-PI | 1..881 | 1..881 | 4617 | 100 | Plus |
| mfas-PC | 881 | CG3359-PC | 1..881 | 1..881 | 4617 | 100 | Plus |
| mfas-PJ | 905 | CG3359-PJ | 1..905 | 1..881 | 4582 | 97.3 | Plus |
| mfas-PO | 839 | CG3359-PO | 1..839 | 1..881 | 4207 | 93.2 | Plus |
