BS32341.complete Sequence
626 bp assembled on 2013-05-22
> BS32341.complete
GAAGTTATCAGTCGACATGTCCCTCCGTTTATTTATCCATAGTCGCGCAT
TCGGTGCGCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCCGGAGC
AGCGGCGGGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCGCACAA
AGATCAACTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAGCCTCG
CTGCGCTACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCCCTGTG
GCGGGGGAACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGCCATAC
AGTTCACGGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACAAGGAC
GGCACCAACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCGGGAAT
CACCTCACAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCGCATGG
CCGTCACGGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCTTCACC
AAGATCTGGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTACTGGGC
GACCGTTCTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCACCTACG
AGACTCTTAAAAGCTTTCTAGACCAT
BS32341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFB-RA | 594 | CG33488-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
| att-ORFA-RF | 1098 | CG4241-PF | 194..749 | 55..610 | 2780 | 100 | Plus |
| att-ORFA-RD | 1095 | CG4241-PD | 194..749 | 55..610 | 2780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-RB | 1336 | CG4241-RB | 120..713 | 17..610 | 2970 | 100 | Plus |
| att-ORFB-RA | 1336 | CG33488-RA | 120..713 | 17..610 | 2970 | 100 | Plus |
| att-ORFA-RE | 1440 | CG4241-RE | 261..817 | 54..610 | 2785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20553896..20554204 | 358..50 | 1530 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20553584..20553835 | 610..359 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 20554253..20554290 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:39:02 has no hits.
BS32341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 09:59:42 Download gff for
BS32341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFB-RA | 120..711 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:07 Download gff for
BS32341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RB | 120..711 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:59 Download gff for
BS32341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFB-RA | 120..711 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:59 Download gff for
BS32341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20553586..20553835 | 359..608 | 100 | <- | Minus |
| 3R | 20553896..20554199 | 55..358 | 100 | <- | Minus |
| 3R | 20554253..20554290 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:07 Download gff for
BS32341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16379975..16380012 | 17..54 | 100 | | Minus |
| arm_3R | 16379308..16379557 | 359..608 | 100 | <- | Minus |
| arm_3R | 16379618..16379921 | 55..358 | 100 | <- | Minus |
BS32341.pep Sequence
Translation from 16 to 609
> BS32341.pep
MSLRLFIHSRAFGAPENRPGGDQPDIRSSGGGAGQDGHRPAGPHKDQLPD
PQRCALLVSSLAALPAKHLCQRGRFGPVAGELGHDGQNRALRSHTVHGPR
AVASHPARRQGRHQHERSSVFGWLPGGNHLTVADVSSGPGTRPHGRHGSV
YWLSDAATSLHQDLGGGGSADAVPRLLGDRSRRDSLCGHLLLHLRDS*
BS32341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFB-PA | 197 | CG33488-PA | 1..197 | 1..197 | 1068 | 100 | Plus |
