BS32347.complete Sequence
1958 bp assembled on 2013-09-16
> BS32347.complete
GAAGTTATCAGTCGACATGCCCAAATTACCAGCGGTTGGCATTGATCTTG
GTACCACGTACTCGTGTGTCGGTGTCTTTCAGCATGGCAAGGTGGAGATC
ATCGCCAACGACCAGGGCAATCGAACCACGCCCAGCTATGTGGCTTTCAC
GGAGTCGGAGCGTCTGATCGGCGATGCGGCCAAGAACCAGGTGGCCATGA
ATCCCAACAACACGATCTTTGATGCCAAGCGGCTGATTGGCCGCCGTTTC
GACGACGCCACCGTCCAGTCGGACATGAAGCATTGGCCCTTCGAGGTGTT
CGCCGAGAACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGA
AGAGCTTCTATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGA
GAGACCGCGGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTGGTCAC
CGTTCCGGCGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGG
GTGCCATTGCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCG
GCGGCCATAGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGT
CTTGATCTTCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCA
TCGAGGATGGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTC
GGCGGCGAGGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTT
TCAGCGCAAACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGC
GACTCCGAACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACA
CAGGCCAGCATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACAC
CTCGGTGACACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAG
GTACCATGGAACCAGTGGCCAAGGCGTTGCGTGATGCCAAGATGGACAAG
GGCCAGATACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAA
AGTGCAACGTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGT
CCATCAATCCCGATGAGGCGGTTGCCTATGGTGCTGCAGTGCAGGCGGCC
ATCCTCCATGGCGATAAATCGGAGGCAGTGCAGGATCTGCTCCTGCTGGA
TGTCACTCCTCTGTCTCTGGGTATTGAGACTGCTGGCGGAGTGATGACTA
CGCTGATTAAGAGGAACACCACCATACCCACCAAGCAAACGCAAATCTTT
ACCACTTATGCGGACAACCAGCCAGGTGTGCTTATCCAGGTGTTCGAGGG
CGAGCGGGCGATGACGCGAGATAACAACAGCCTGGGTAAGTTTGAACTCT
CGGCAATTCCACCGGCTCCACGCGGAGTGCCCCAGGTGGAGGTAACGTTT
GACATCGATGCCAATGGAATACTCAATGTGACGGCACTGGAGAAGTCGAC
GGGAAAGGAGAACCGTATCACTATCACCAATGACAAGGGCCGTCTCTCCA
AGGAGGACATCGAGCGGATGGTCAATGATGCGGAGGCTTATCGCCAAGCG
GATGAGCAGCAACGCGACCGCATCAATGCCAAGAACCAGCTGGAGTCGTA
CTGTTTCCAGCTGCGCTCCACTCTGGACGATGAGCATCTGAGCAGCCGTT
TTAGCCCCGCGGATCGGGAGACCATCCAGCAGCGGTCCAGTGAAACAATT
GCCTGGTTGGATGCCAATCAACTGGCCGAACGGCAGGAGTTCGAGCACAA
GCAGCAGGAACTGGAGAGAATCTGCAGTCCGATCATCACGAGGTTGTACC
AGGGCGCTGGAATGGCACCACCTCCAACAGCCGGAGGCTCCAATCCAGGA
GCAACTGGCGGCTCGGGTCCAACCATTGAGGAGGTTGATTAGAAGCTTTC
TAGACCAT
BS32347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-1-RA | 1926 | CG8937-PA | 1..1926 | 17..1942 | 9585 | 99.8 | Plus |
| Hsc70-1-RD | 1668 | CG8937-PD | 1..1668 | 275..1942 | 8295 | 99.8 | Plus |
| Hsc70-1-RC | 1668 | CG8937-PC | 1..1668 | 275..1942 | 8295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-1-RA | 2168 | CG8937-RA | 119..2044 | 17..1942 | 9585 | 99.8 | Plus |
| Hsc70-1-RC | 2611 | CG8937-RC | 766..2487 | 221..1942 | 8565 | 99.8 | Plus |
| Hsc70-1-RD | 2543 | CG8937-RD | 699..2419 | 222..1942 | 8560 | 99.8 | Plus |
| Hsc70-1-RC | 2611 | CG8937-RC | 362..566 | 17..221 | 1025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13975916..13977637 | 221..1942 | 8565 | 99.8 | Plus |
| 3R | 32079331 | 3R | 15244378..15245954 | 35..1611 | 2665 | 77.9 | Plus |
| 3R | 32079331 | 3R | 11954842..11956279 | 1470..36 | 1335 | 73 | Minus |
| 3R | 32079331 | 3R | 11958799..11960236 | 36..1470 | 1335 | 73 | Plus |
| 3R | 32079331 | 3R | 12506045..12507597 | 36..1585 | 1265 | 72.2 | Plus |
| 3R | 32079331 | 3R | 12509328..12510880 | 36..1585 | 1265 | 72.2 | Plus |
| 3R | 32079331 | 3R | 12502762..12504314 | 36..1585 | 1250 | 72.2 | Plus |
| 3R | 32079331 | 3R | 12465995..12467547 | 1585..36 | 1235 | 72.1 | Minus |
| 3R | 32079331 | 3R | 24055542..24057101 | 1585..29 | 1090 | 71.5 | Minus |
| 3L | 28110227 | 3L | 13974571..13974775 | 17..221 | 1025 | 100 | Plus |
| 3R | 32079331 | 3R | 13045581..13046126 | 187..729 | 715 | 75.8 | Plus |
| 3R | 32079331 | 3R | 13044991..13045131 | 53..193 | 330 | 82.3 | Plus |
| X | 23542271 | X | 11803941..11804118 | 581..404 | 275 | 77 | Minus |
| 2R | 25286936 | 2R | 14254880..14254977 | 540..443 | 235 | 82.7 | Minus |
| X | 23542271 | X | 11804278..11804430 | 244..95 | 220 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:46:44 has no hits.
BS32347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:00 Download gff for
BS32347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RA | 119..2044 | 17..1942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:34:55 Download gff for
BS32347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RA | 119..2044 | 17..1942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:34:55 Download gff for
BS32347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13974571..13974775 | 17..221 | 100 | -> | Plus |
| 3L | 13975917..13977637 | 222..1942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:00 Download gff for
BS32347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13967671..13967875 | 17..221 | 100 | -> | Plus |
| arm_3L | 13969017..13970737 | 222..1942 | 99 | | Plus |
BS32347.pep Sequence
Translation from 16 to 1941
> BS32347.pep
MPKLPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTESERL
IGDAAKNQVAMNPNNTIFDAKRLIGRRFDDATVQSDMKHWPFEVFAENGK
PRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLGGTVTDAVVTVPAYF
NDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKQGTSERNVLIFDL
GGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFQRKHK
KDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRA
RFEELNGDLFRGTMEPVAKALRDAKMDKGQIHDIVLVGGSTRIPKVQRLL
QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEAVQDLLLLDVTPLS
LGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQPGVLIQVFEGERAMT
RDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGILNVTALEKSTGKENR
ITITNDKGRLSKEDIERMVNDAEAYRQADEQQRDRINAKNQLESYCFQLR
STLDDEHLSSRFSPADRETIQQRSSETIAWLDANQLAERQEFEHKQQELE
RICSPIITRLYQGAGMAPPPTAGGSNPGATGGSGPTIEEVD*
BS32347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-1-PA | 641 | CG8937-PA | 1..641 | 1..641 | 3270 | 100 | Plus |
| Hsc70-1-PD | 555 | CG8937-PD | 1..555 | 87..641 | 2826 | 100 | Plus |
| Hsc70-1-PC | 555 | CG8937-PC | 1..555 | 87..641 | 2826 | 100 | Plus |
| Hsc70-4-PG | 651 | CG4264-PG | 1..651 | 1..641 | 2744 | 81.1 | Plus |
| Hsc70-4-PB | 651 | CG4264-PB | 1..651 | 1..641 | 2744 | 81.1 | Plus |
