BS32348.complete Sequence
1472 bp assembled on 2013-05-22
> BS32348.complete
GAAGTTATCAGTCGACATGCTCTGCCCTCCAACCATGCGTCCGGCCAGTC
CCGCCGAATCCGAAATCTCCGTGGGCGGAGCCCCCAGCCCGCTGCCCACG
CAGCATCATACGCATCCGCACTCGCATCCTCATCCGCTGCAGCATCCGCG
GGCCAGCACCATTGATCTGCTGCAGCAGCAGCAGCTGCTGATGCAGCACC
ATGCCGCAGCAGCCGCCGCAGCAGCTGCAGCCGCCTCCGGACTCACCCGG
AGTGCCGTCGGCAATTTGCCGGAGGACTACTTCCATCCGCTGAAGCGCCT
GCGCATGTCCTCGTCCTCCTCGGAGCCACGAGACCACACGCCCAGTCCGC
CGTCAGCAGTTCCGGAGCCCCAGACCAACCAGACTACCAAGTCGGCCATC
GAGGGGGTTAAGAGCTTCTCCATCGCGGACATACTGGGTCACTCGGAGAA
GCAGCGCGAGGAGTCCGTTTCCCCGCCCCCAAATGCAAACCTCCTGGCTC
CACCTGCCTCCCGGCCCATTGCCCCCTCGGGCGGATTACTGCAGCCACGC
ACGGAACCGTTGGATGTCCACCCGGCCGCTGCTGCTGCCATGCTCCTGCC
AAGCGGACAGATTGTTCGGCCGTGGGATCACCTCCTGGGGCCGACCATGC
CCGTCCGCCCCTTCATCCCCTCCGCCCTGCTGCACTACGAGCAGCGCCTG
GCCCTGGACTACCATCGCCAGTTGCAGGAACACTTTAACGCCCAGGCCCA
GCTCCTTCGCCACATGGGCATGAATCCCGCGATCATCGCTTCCGAGGACG
GCAGCTCGGAGCGTTCCCAGCGATCGAGCAGCAGCAATGGCAGCACCGAA
TGCTGCAGCCCACGGCAGGCGGAAAAACTTGAAAAACTAACCACCCAAGA
GGGAAGTGAGGAAGCTCAGAAGAAGAAATCAGAGGAGCAGCCAACGGGTT
CAGGAAAGTCAAACGGAGACACTCCTCTGGATGCTCTCTTCCAGATGACC
ACAAAGGACTTTGACGAGTCGCAAGATAAATCCCACTTGGACATCTTCTC
GAACAGGCCGCAGCCGAAGAAGAAGCGCAAGTCGCGCACCGCCTTCACCA
ACCACCAGATCTTTGAGCTGGAGAAGCGGTTCCTCTACCAGAAGTACCTG
TCGCCAGCGGACCGCGATGAGATCGCCGCCTCACTGGGACTGTCCAACGC
CCAGGTGATCACCTGGTTCCAGAACCGGCGAGCCAAGCAGAAGCGGGACA
TCGAGGAGCTGAAGAAGGACTTCGATAGCGTCAAGGTCTTCTCCGCCCAC
AAGTCCTTCCTGGAGAACGTGAACGACCTAAGCATCCTCAAGAAGAAGCC
CATGCATGAGTCGGACATGGTGGGCCTGGCCGCTGCGGCAGCCGCTGCCG
GAATGGTGGTTCCCGTGCCTGGATCCGTGCCAATGGGAGGCGCTCCGCCC
AAATGAAAGCTTTCTAGACCAT
BS32348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lbe-RA | 1440 | CG6545-PA | 1..1440 | 17..1456 | 7020 | 99.2 | Plus |
| lbl-RC | 1233 | CG6570-PC | 366..948 | 685..1270 | 990 | 78.3 | Plus |
| lbl-RA | 1119 | CG6570-PA | 366..948 | 685..1270 | 990 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lbe-RA | 2277 | CG6545-RA | 445..1884 | 17..1456 | 7020 | 99.2 | Plus |
| lbl-RC | 1803 | CG6570-RC | 532..1114 | 685..1270 | 990 | 78.3 | Plus |
| lbl-RA | 1855 | CG6570-RA | 532..1114 | 685..1270 | 990 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21445081..21446093 | 1029..17 | 4975 | 99.4 | Minus |
| 3R | 32079331 | 3R | 21441970..21442402 | 1456..1024 | 2060 | 98.4 | Minus |
| 3R | 32079331 | 3R | 21433273..21433602 | 1017..685 | 565 | 78.7 | Minus |
| 3R | 32079331 | 3R | 21411070..21411211 | 1208..1067 | 410 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:39:57 has no hits.
BS32348.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 10:00:01 Download gff for
BS32348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbe-RA | 228..1666 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:11:33 Download gff for
BS32348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbe-RA | 445..1883 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:20 Download gff for
BS32348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbe-RA | 445..1883 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:20 Download gff for
BS32348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21441971..21442400 | 1026..1455 | 98 | <- | Minus |
| 3R | 21445085..21446093 | 17..1025 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:11:33 Download gff for
BS32348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17267693..17268122 | 1026..1455 | 98 | <- | Minus |
| arm_3R | 17270807..17271815 | 17..1025 | 99 | | Minus |
BS32348.pep Sequence
Translation from 16 to 1455
> BS32348.pep
MLCPPTMRPASPAESEISVGGAPSPLPTQHHTHPHSHPHPLQHPRASTID
LLQQQQLLMQHHAAAAAAAAAAASGLTRSAVGNLPEDYFHPLKRLRMSSS
SSEPRDHTPSPPSAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREES
VSPPPNANLLAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIV
RPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHM
GMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEA
QKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQP
KKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITW
FQNRRAKQKRDIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESD
MVGLAAAAAAAGMVVPVPGSVPMGGAPPK*
BS32348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lbe-PA | 479 | CG6545-PA | 1..479 | 1..479 | 2483 | 100 | Plus |
| lbl-PA | 372 | CG6570-PA | 7..346 | 98..449 | 896 | 57.3 | Plus |
| lbl-PC | 410 | CG6570-PC | 7..322 | 98..424 | 833 | 57.1 | Plus |
| lbl-PB | 294 | CG6570-PB | 7..276 | 98..371 | 497 | 45.9 | Plus |
| B-H2-PA | 645 | CG5488-PA | 3..437 | 6..410 | 195 | 24.6 | Plus |
